SRR16796968 (PRJNA778050)
Processing Status: Completed
General Details
| Sample Name | ribo_harr_ts_r1 |
|---|---|
| Organism | Cricetulus griseus |
| Release Date | 12/2022 |
Sample Links
| GWIPS-viz | Trips-Viz | Custom Track |
|---|---|---|
Run Details
| Spots | 63411853 |
|---|---|
| Total Bases | 3234004503 |
| Total Bases | 3234004503 |
Repository Details
| SRA | SRR16796968 |
|---|---|
| ENA | SRR16796968 |
| BioProject | PRJNA778050 |
Experiment Details
| Title | Harringtonine Ribo-seq temerature shifted replicate 1 |
|---|
Sample Details
| Run Accession | SRR16796968 |
|---|---|
| Total Number Of Spots (Original File)) | 63411853 |
| Total Number Of Bases (Original File) | 3234004503 |
| Average Read Length | 51 |
| Original File Size (Mb) | 1008 |
| Experiment Id | SRX12995913 |
| Library Name | ribo_harr_ts_r1 |
| Library Strategy | OTHER |
| Library Selection | Inverse rRNA |
| Library Source | OTHER |
| Library Layout | SINGLE |
| Insert Size | 0 |
| Insert Deviation | 0 |
| Platform | ILLUMINA |
| Model | NextSeq 500 |
| Sra Project Accession (Srp) | SRP344698 |
| Pubmed Id | <NA> |
| Sample | SRS10936102 |
| Biosample | SAMN22901740 |
| Sample Type | simple |
| Organism Taxid | 10029 |
| Organism | Cricetulus griseus |
| Sample Name | ribo_harr_ts_r1 |
| Center Name | NIBRT |
| Submission | SRA1323672 |
| Month | 12 |
| Year | 2022 |
| Sample Title | Harringtonine Ribo-seq temerature shifted replicate 1 |
| Library-Type | Ribo-Seq |
| Replicate-Number | 1.0 |
| Condition | temperature shifted |
| Inhibitor | Harringtonine |
| Tissue | Ovary |
| Cell-Line | CHO |
| Stage | not applicable |
| Sex | female |
| Strain | not applicable_not applicablenot applicable |
| Age | not applicable |
| Growth-Condition | CHOK1 cell line (CHO K1 mAb) was seeded at a density of 2 × 105 cells/ml in 50ml SFM-II media (Gibco, 12052098) in 8 replicate shake flasks in a Kuhner orbital shaker at 170rpm at 5% CO2. |
| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SRR16796968 | Cricetulus griseus | CHO | Ribo-Seq | Harringtonine |  |
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| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) |
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