SRR18402611 (PRJNA818335)

Processing Status: Completed

General Details

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Sample Name GSM5964227
Organism Homo sapiens
Release Date 12/2022

Sample Links

Run Details

Spots 143779824
Total Bases 7188991200
Total Bases 7188991200

Repository Details

SRA SRR18402611
ENA SRR18402611
BioProject PRJNA818335

Experiment Details

Title Repeat 1: BUD23 targetting shRNA - ribosome footprint RNA

Sample Details

Run Accession SRR18402611
Total Number Of Spots (Original File)) 143779824
Total Number Of Bases (Original File) 7188991200
Average Read Length 50
Original File Size (Mb) 2077
Experiment Id SRX14536494
Library Name GSM5964227
Library Strategy OTHER
Library Selection other
Library Source TRANSCRIPTOMIC
Library Layout SINGLE
Insert Size 0
Insert Deviation 0
Platform ILLUMINA
Model Illumina NovaSeq 6000
Sra Project Accession (Srp) SRP365126
Pubmed Id 36653366
Sample SRS12333592
Biosample SAMN26855356
Sample Type simple
Organism Taxid 9606
Organism Homo sapiens
Sample Name GSM5964227
Center Name Adrian Whitehouse, Faculty of Biological Sciences, University of Leeds
Submission SRA1390089
Month 12
Year 2022
Author Murphy
Sample Source TREx BCBL1-Rta
Sample Title Repeat 1: BUD23 targetting shRNA - ribosome footprint RNA
Library-Type Ribo-Seq
Timepoint 36 hours post KSHV lytic inductionNA
Cell-Line TREx BCBL1-Rta
Cellular-Compartment Ribosome footprint RNA
Genotype Stably expressing a shRNA targetting BUD23
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)
SRR18402611 Homo sapiens TREx BCBL1-Rta TREx BCBL1-Rta Ribo-Seq
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)

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