SRR18402614 (PRJNA818335)
Processing Status: Completed
General Details
| Sample Name | GSM5964230 |
|---|---|
| Organism | Homo sapiens |
| Release Date | 12/2022 |
Sample Links
| GWIPS-viz | Trips-Viz | Custom Track |
|---|---|---|
Run Details
| Spots | 123914429 |
|---|---|
| Total Bases | 6195721450 |
| Total Bases | 6195721450 |
Repository Details
| SRA | SRR18402614 |
|---|---|
| ENA | SRR18402614 |
| BioProject | PRJNA818335 |
Experiment Details
| Title | Repeat 2: Scrambled shRNA - ribosome footprint RNA |
|---|
Sample Details
| Run Accession | SRR18402614 |
|---|---|
| Total Number Of Spots (Original File)) | 123914429 |
| Total Number Of Bases (Original File) | 6195721450 |
| Average Read Length | 50 |
| Original File Size (Mb) | 1809 |
| Experiment Id | SRX14536497 |
| Library Name | GSM5964230 |
| Library Strategy | OTHER |
| Library Selection | other |
| Library Source | TRANSCRIPTOMIC |
| Library Layout | SINGLE |
| Insert Size | 0 |
| Insert Deviation | 0 |
| Platform | ILLUMINA |
| Model | Illumina NovaSeq 6000 |
| Sra Project Accession (Srp) | SRP365126 |
| Pubmed Id | 36653366 |
| Sample | SRS12333595 |
| Biosample | SAMN26855353 |
| Sample Type | simple |
| Organism Taxid | 9606 |
| Organism | Homo sapiens |
| Sample Name | GSM5964230 |
| Center Name | Adrian Whitehouse, Faculty of Biological Sciences, University of Leeds |
| Submission | SRA1390089 |
| Month | 12 |
| Year | 2022 |
| Author | Murphy |
| Sample Source | TREx BCBL1-Rta |
| Sample Title | Repeat 2: Scrambled shRNA - ribosome footprint RNA |
| Library-Type | Ribo-Seq |
| Replicate-Number | 0.0 |
| Condition | Test |
| Inhibitor | 0.0 |
| Timepoint | 36 hours post KSHV lytic inductionNANANA |
| Tissue | 0.0 |
| Cell-Line | TREx BCBL1-RtaNA |
| Cellular-Compartment | Ribosome footprint RNA |
| Stage | 0.0 |
| Gene | 0.0 |
| Sex | 0.0 |
| Strain | 0.0 |
| Age | 0.0 |
| Infected | 0.0 |
| Disease | 0.0 |
| Genotype | Stably expressing a scrambled control shRNA |
| Feeding | 0.0 |
| Temperature | 0.0 |
| Sirna | 0.0 |
| Sgrna | 0.0 |
| Shrna | 0.0 |
| Plasmid | 0.0 |
| Growth-Condition | 0.0 |
| Stress | 0.0 |
| Cancer | 0.0 |
| Microrna | 0.0 |
| Individual | 0.0 |
| Antibody Used | 0.0 |
| Ethnicity | 0.0 |
| Dose | 0.0 |
| Stimulation | 0.0 |
| Host Organism | 0.0 |
| Unique Molecular Identifier (Umi) | 0.0 |
| Adapter Sequence | 0.0 |
| Mode Of Separation | 0.0 |
| Mode Of Rrna Depletion | 0.0 |
| Barcode Information | 0.0 |
| Nucelase Used | 0.0 |
| Kit Used | 0.0 |
| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SRR18402614 | Homo sapiens | TREx BCBL1-Rta | TREx BCBL1-RtaNA | Ribo-Seq | 0.0 |  |
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| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) |
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