SRR2007077 (PRJNA282960)

Processing Status: Failed

General Details

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Sample Name GSM1666818
Organism Mus musculus
Release Date 1/2016

Sample Links

Run Details

Spots 22615405
Total Bases 1153385655
Total Bases 1153385655

Repository Details

SRA SRR2007077
ENA SRR2007077
BioProject PRJNA282960

Experiment Details

Title ATF4-/- ER ribosome profiling, 1 h Tg (rep 2)

Sample Details

Run Accession SRR2007077
Total Number Of Spots (Original File)) 22615405
Total Number Of Bases (Original File) 1153385655
Average Read Length 51
Original File Size (Mb) 711
Experiment Id SRX1017048
Library Strategy OTHER
Library Selection other
Library Source TRANSCRIPTOMIC
Library Layout SINGLE
Insert Size 0
Insert Deviation 0
Platform ILLUMINA
Model Illumina HiSeq 2500
Sra Project Accession (Srp) SRP057991
Pubmed Id <NA>
Sample SRS928301
Biosample SAMN03581130
Sample Type simple
Organism Taxid 10090
Organism Mus musculus
Sample Name GSM1666818
Center Name GEO
Submission SRA266203
Month 1
Year 2016
Sample Source ATF4-/- mouse embryonic fibroblasts, ER, 1 h Tg
Sample Title ATF4-/- ER ribosome profiling, 1 h Tg (rep 2)
Library-Type Ribo-Seq
Condition Test
Inhibitor thapsigargin
Timepoint 1h
Tissue Embryo
Cell-Line Fibroblast
Cellular-Compartment Endoplasmic reticulum
Genotype ATF4-/-
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)
SRR2007077 Mus musculus ATF4-/- mouse embryonic fibroblasts, ER, 1 h Tg Fibroblast Ribo-Seq thapsigargin
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)

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