SRR2007079 (PRJNA282960)
Processing Status: Failed
General Details
| Sample Name | GSM1666820 |
|---|---|
| Organism | Mus musculus |
| Release Date | 1/2016 |
Sample Links
| GWIPS-viz | Trips-Viz | Custom Track |
|---|---|---|
Run Details
| Spots | 21371573 |
|---|---|
| Total Bases | 1089950223 |
| Total Bases | 1089950223 |
Repository Details
| SRA | SRR2007079 |
|---|---|
| ENA | SRR2007079 |
| BioProject | PRJNA282960 |
Experiment Details
| Title | ATF4-/- ER ribosome profiling, 2 h Tg (rep 2) |
|---|
Sample Details
| Run Accession | SRR2007079 |
|---|---|
| Total Number Of Spots (Original File)) | 21371573 |
| Total Number Of Bases (Original File) | 1089950223 |
| Average Read Length | 51 |
| Original File Size (Mb) | 672 |
| Experiment Id | SRX1017050 |
| Library Strategy | OTHER |
| Library Selection | other |
| Library Source | TRANSCRIPTOMIC |
| Library Layout | SINGLE |
| Insert Size | 0 |
| Insert Deviation | 0 |
| Platform | ILLUMINA |
| Model | Illumina HiSeq 2500 |
| Sra Project Accession (Srp) | SRP057991 |
| Pubmed Id | <NA> |
| Sample | SRS928306 |
| Biosample | SAMN03581132 |
| Sample Type | simple |
| Organism Taxid | 10090 |
| Organism | Mus musculus |
| Sample Name | GSM1666820 |
| Center Name | GEO |
| Submission | SRA266203 |
| Month | 1 |
| Year | 2016 |
| Sample Source | ATF4-/- mouse embryonic fibroblasts, ER, 2 h Tg |
| Sample Title | ATF4-/- ER ribosome profiling, 2 h Tg (rep 2) |
| Library-Type | Ribo-Seq |
| Condition | Test |
| Inhibitor | thapsigargin |
| Timepoint | 2h |
| Tissue | Embryo |
| Cell-Line | Fibroblast |
| Cellular-Compartment | Endoplasmic reticulum |
| Genotype | ATF4-/- |
| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SRR2007079 | Mus musculus | ATF4-/- mouse embryonic fibroblasts, ER, 2 h Tg | Fibroblast | Ribo-Seq | thapsigargin |  |
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| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) |
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