SRR2007080 (PRJNA282960)

General Details

View quality reports

Sample Name GSM1666821
Organism Mus musculus
Release Date 1/2016

Sample Links

Run Details

Spots 21983441
Total Bases 1121155491
Total Bases 1121155491

Repository Details

SRA SRR2007080
ENA SRR2007080
BioProject PRJNA282960

Experiment Details

Title ATF4-/- cytosol ribosome profiling, 4 h Tg (rep 2)

Sample Details

Run Accession SRR2007080
Total Number Of Spots (Original File)) 21983441
Total Number Of Bases (Original File) 1121155491
Average Read Length 51
Original File Size (Mb) 688
Experiment Id SRX1017051
Library Strategy OTHER
Library Selection other
Library Source TRANSCRIPTOMIC
Library Layout SINGLE
Insert Size 0
Insert Deviation 0
Platform ILLUMINA
Model Illumina HiSeq 2500
Sra Project Accession (Srp) SRP057991
Pubmed Id <NA>
Sample SRS928298
Biosample SAMN03581133
Sample Type simple
Organism Taxid 10090
Organism Mus musculus
Sample Name GSM1666821
Center Name GEO
Submission SRA266203
Month 1
Year 2016
Sample Source ATF4-/- mouse embryonic fibroblasts, cytosol, 4 h Tg
Sample Title ATF4-/- cytosol ribosome profiling, 4 h Tg (rep 2)
Library-Type Ribo-Seq
Condition Test
Inhibitor thapsigargin
Timepoint 4h
Tissue Embryo
Cell-Line mouse embryonic fibroblasts
Cellular-Compartment Cytoplasmic
Genotype ATF4-/-
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)
SRR2007080 Mus musculus ATF4-/- mouse embryonic fibroblasts, cytosol, 4 h Tg mouse embryonic fibroblasts Ribo-Seq thapsigargin
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)

ⓘ For more Information on the columns shown here see: About