SRR20138952 (PRJNA858256)
Processing Status: Completed
General Details
| Sample Name | GSM6336917 |
|---|---|
| Organism | Haloferax volcanii |
| Release Date | 1/2023 |
Sample Links
| GWIPS-viz | Trips-Viz | Custom Track |
|---|---|---|
Run Details
| Spots | 19878881 |
|---|---|
| Total Bases | 1510794956 |
| Total Bases | 1510794956 |
Repository Details
| SRA | SRR20138952 |
|---|---|
| ENA | SRR20138952 |
| BioProject | PRJNA858256 |
Experiment Details
| Title | wild-type, MNase, RIBO-seq, Replicate 2 |
|---|
Sample Details
| Run Accession | SRR20138952 |
|---|---|
| Total Number Of Spots (Original File)) | 19878881 |
| Total Number Of Bases (Original File) | 1510794956 |
| Average Read Length | 76 |
| Original File Size (Mb) | 614 |
| Experiment Id | SRX16174091 |
| Library Name | GSM6336917 |
| Library Strategy | OTHER |
| Library Selection | other |
| Library Source | TRANSCRIPTOMIC |
| Library Layout | SINGLE |
| Insert Size | 0 |
| Insert Deviation | 0 |
| Platform | ILLUMINA |
| Model | NextSeq 500 |
| Sra Project Accession (Srp) | SRP386192 |
| Pubmed Id | 37223747 |
| Sample | SRS13835895 |
| Biosample | SAMN29680390 |
| Sample Type | simple |
| Organism Taxid | 2246 |
| Organism | Haloferax volcanii |
| Sample Name | GSM6336917 |
| Center Name | Bioinformatics Group (AG Backofen), Department of Computer Science, Albert-Ludwigs-University Freiburg |
| Submission | SRA1454229 |
| Month | 1 |
| Year | 2023 |
| Author | 0.0 |
| Sample Source | archaea |
| Sample Title | wild-type, MNase, RIBO-seq, Replicate 2 |
| Library-Type | Ribo-Seq |
| Replicate-Number | 2.0 |
| Condition | Wild Type |
| Inhibitor | 0.0 |
| Timepoint | NANA |
| Tissue | archaea |
| Cell-Line | NA_archaea |
| Cellular-Compartment | 0.0 |
| Stage | 0.0 |
| Gene | 0.0 |
| Sex | 0.0 |
| Strain | H119 |
| Age | 0.0 |
| Infected | 0.0 |
| Disease | 0.0 |
| Genotype | wild type |
| Feeding | 0.0 |
| Temperature | 0.0 |
| Sirna | 0.0 |
| Sgrna | 0.0 |
| Shrna | 0.0 |
| Plasmid | 0.0 |
| Growth-Condition | 0.0 |
| Stress | 0.0 |
| Cancer | 0.0 |
| Microrna | 0.0 |
| Individual | 0.0 |
| Antibody Used | 0.0 |
| Ethnicity | 0.0 |
| Dose | 0.0 |
| Stimulation | 0.0 |
| Host Organism | 0.0 |
| Unique Molecular Identifier (Umi) | 0.0 |
| Adapter Sequence | 0.0 |
| Mode Of Separation | 0.0 |
| Mode Of Rrna Depletion | 0.0 |
| Barcode Information | 0.0 |
| Nucelase Used | 0.0 |
| Kit Used | 0.0 |
| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SRR20138952 | Haloferax volcanii | archaea | NA_archaea | Ribo-Seq | 0.0 |  |
 |
 |
 |
|
|
||
| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) |
ⓘ For more Information on the columns shown here see: About