SRR2052948 (PRJNA285961)
Processing Status: Completed
General Details
| Sample Name | GSM1704540 |
|---|---|
| Organism | Homo sapiens |
| Release Date | 9/2016 |
Sample Links
| GWIPS-viz | Trips-Viz | Custom Track |
|---|---|---|
Run Details
| Spots | 2339594 |
|---|---|
| Total Bases | 119319294 |
| Total Bases | 119319294 |
Repository Details
| SRA | SRR2052948 |
|---|---|
| ENA | SRR2052948 |
| BioProject | PRJNA285961 |
Experiment Details
| Title | 6 h infection ER ribosome profiling (Rep 4) |
|---|
Sample Details
| Run Accession | SRR2052948 |
|---|---|
| Total Number Of Spots (Original File)) | 2339594 |
| Total Number Of Bases (Original File) | 119319294 |
| Average Read Length | 51 |
| Original File Size (Mb) | 56 |
| Experiment Id | SRX1050365 |
| Library Name | 0.0 |
| Library Strategy | OTHER |
| Library Selection | other |
| Library Source | TRANSCRIPTOMIC |
| Library Layout | SINGLE |
| Insert Size | 0 |
| Insert Deviation | 0 |
| Platform | ILLUMINA |
| Model | Illumina HiSeq 2500 |
| Sra Project Accession (Srp) | SRP059187 |
| Pubmed Id | 29321322 |
| Sample | SRS954611 |
| Biosample | SAMN03763377 |
| Sample Type | simple |
| Organism Taxid | 9606 |
| Organism | Homo sapiens |
| Sample Name | GSM1704540 |
| Center Name | GEO |
| Submission | SRA271639 |
| Month | 9 |
| Year | 2016 |
| Author | Reid |
| Sample Source | Huh7 cells |
| Sample Title | 6 h infection ER ribosome profiling (Rep 4) |
| Library-Type | Ribo-Seq |
| Replicate-Number | Rep 4NA |
| Condition | Test |
| Inhibitor | Cycloheximide |
| Timepoint | NANA |
| Tissue | Liver |
| Cell-Line | Huh7 |
| Cellular-Compartment | Endoplasmic reticulum |
| Stage | 0.0 |
| Gene | 0.0 |
| Sex | 0.0 |
| Strain | DENV2 (M29095.1) |
| Age | 0.0 |
| Infected | 0.0 |
| Disease | 0.0 |
| Genotype | 0.0 |
| Feeding | 0.0 |
| Temperature | 0.0 |
| Sirna | 0.0 |
| Sgrna | 0.0 |
| Shrna | 0.0 |
| Plasmid | 0.0 |
| Growth-Condition | 0.0 |
| Stress | 0.0 |
| Cancer | 0.0 |
| Microrna | 0.0 |
| Individual | 0.0 |
| Antibody Used | 0.0 |
| Ethnicity | 0.0 |
| Dose | 0.0 |
| Stimulation | 0.0 |
| Host Organism | 0.0 |
| Unique Molecular Identifier (Umi) | 0.0 |
| Adapter Sequence | 0.0 |
| Mode Of Separation | 0.0 |
| Mode Of Rrna Depletion | 0.0 |
| Barcode Information | 0.0 |
| Nucelase Used | 0.0 |
| Kit Used | 0.0 |
| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SRR2052948 | Homo sapiens | Huh7 cells | Huh7 | Ribo-Seq | Cycloheximide |  |
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| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) |
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