SRR2052987 (PRJNA285961)
Processing Status: Completed
General Details
| Sample Name | GSM1704579 |
|---|---|
| Organism | Homo sapiens |
| Release Date | 9/2016 |
Sample Links
| GWIPS-viz | Trips-Viz | Custom Track |
|---|---|---|
| Visit Trips-Viz |
Run Details
| Spots | 31451899 |
|---|---|
| Total Bases | 1604046849 |
| Total Bases | 1604046849 |
Repository Details
| SRA | SRR2052987 |
|---|---|
| ENA | SRR2052987 |
| BioProject | PRJNA285961 |
Experiment Details
| Title | 72 h DENV1 infection Total cell lysate ribosome profiling (rep 1) |
|---|
Sample Details
| Run Accession | SRR2052987 |
|---|---|
| Total Number Of Spots (Original File)) | 31451899 |
| Total Number Of Bases (Original File) | 1604046849 |
| Average Read Length | 51 |
| Original File Size (Mb) | 1061 |
| Experiment Id | SRX1050404 |
| Library Strategy | OTHER |
| Library Selection | other |
| Library Source | TRANSCRIPTOMIC |
| Library Layout | SINGLE |
| Insert Size | 0 |
| Insert Deviation | 0 |
| Platform | ILLUMINA |
| Model | Illumina HiSeq 2500 |
| Sra Project Accession (Srp) | SRP059187 |
| Pubmed Id | 29321322 |
| Sample | SRS954577 |
| Biosample | SAMN03763471 |
| Sample Type | simple |
| Organism Taxid | 9606 |
| Organism | Homo sapiens |
| Sample Name | GSM1704579 |
| Center Name | GEO |
| Submission | SRA271639 |
| Month | 9 |
| Year | 2016 |
| Author | Reid |
| Sample Source | Huh7 cells |
| Sample Title | 72 h DENV1 infection Total cell lysate ribosome profiling (rep 1) |
| Library-Type | Ribo-Seq |
| Replicate-Number | 1.0 |
| Condition | Test |
| Inhibitor | Cycloheximide |
| Tissue | Liver |
| Cell-Line | Huh7 |
| Cellular-Compartment | Total cell lysate |
| Strain | DENV1 (EU081230.1) |
| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SRR2052987 | Homo sapiens | Huh7 cells | Huh7 | Ribo-Seq | Cycloheximide |  |
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| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) |
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