SRR24083061 (PRJNA950066)

Processing Status: Completed

General Details

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Sample Name S20_ribo_RCNMV_8dpi
Organism Arabidopsis thaliana
Release Date 6/2023

Sample Links

Run Details

Spots 87428067
Total Bases 8742806700
Total Bases 8742806700

Repository Details

SRA SRR24083061
ENA SRR24083061
BioProject PRJNA950066

Experiment Details

Title 0.0

Sample Details

Run Accession SRR24083061
Total Number Of Spots (Original File)) 87428067
Total Number Of Bases (Original File) 8742806700
Average Read Length 100
Original File Size (Mb) 2422
Experiment Id SRX19883991
Library Name S20
Library Strategy OTHER
Library Selection other
Library Source TRANSCRIPTOMIC
Library Layout SINGLE
Insert Size 0
Insert Deviation 0
Platform ILLUMINA
Model Illumina NovaSeq 6000
Sra Project Accession (Srp) SRP431103
Pubmed Id <NA>
Sample SRS17238236
Biosample SAMN33970969
Sample Type simple
Organism Taxid 3702
Organism Arabidopsis thaliana
Sample Name S20_ribo_RCNMV_8dpi
Center Name Iowa State University
Submission SRA1612614
Month 6
Year 2023
Author Lozier
Sample Source 0.0
Sample Title 0.0
Library-Type Ribo-Seq
Replicate-Number 18NA
Condition Test
Inhibitor 0.0
Timepoint NANA
Tissue Leaf
Cell-Line 0.0
Cellular-Compartment 0.0
Stage 8 days post infection
Gene 0.0
Sex 0.0
Strain Col 0
Age 1 month
Infected 0.0
Disease 0.0
Genotype dcl2-1/dcl4-2t double knock-out; Germplasm CS66078
Feeding 0.0
Temperature 0.0
Sirna 0.0
Sgrna 0.0
Shrna 0.0
Plasmid 0.0
Growth-Condition 0.0
Stress 0.0
Cancer 0.0
Microrna 0.0
Individual 0.0
Antibody Used 0.0
Ethnicity 0.0
Dose 0.0
Stimulation 0.0
Host Organism 0.0
Unique Molecular Identifier (Umi) 0.0
Adapter Sequence 0.0
Mode Of Separation 0.0
Mode Of Rrna Depletion 0.0
Barcode Information 0.0
Nucelase Used 0.0
Kit Used 0.0
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)
SRR24083061 Arabidopsis thaliana 0.0 0.0 Ribo-Seq 0.0
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)

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