SRR2724727 (PRJNA299160)
Processing Status: Completed
General Details
| Sample Name | GSM1911112 |
|---|---|
| Organism | Mus musculus |
| Release Date | 12/2015 |
Sample Links
| GWIPS-viz | Trips-Viz | Custom Track |
|---|---|---|
| Visit GWIPS-viz |
Run Details
| Spots | 71079984 |
|---|---|
| Total Bases | 3625079184 |
| Total Bases | 3625079184 |
Repository Details
| SRA | SRR2724727 |
|---|---|
| ENA | SRR2724727 |
| BioProject | PRJNA299160 |
Experiment Details
| Title | BMDC footprints, cycloheximide-treated, 4 h LPS, replicate 1 |
|---|
Sample Details
| Run Accession | SRR2724727 |
|---|---|
| Total Number Of Spots (Original File)) | 71079984 |
| Total Number Of Bases (Original File) | 3625079184 |
| Average Read Length | 51 |
| Original File Size (Mb) | 2322 |
| Experiment Id | SRX1354297 |
| Library Strategy | OTHER |
| Library Selection | other |
| Library Source | TRANSCRIPTOMIC |
| Library Layout | SINGLE |
| Insert Size | 0 |
| Insert Deviation | 0 |
| Platform | ILLUMINA |
| Model | Illumina HiSeq 2500 |
| Sra Project Accession (Srp) | SRP064972 |
| Pubmed Id | 26638175 |
| Sample | SRS1120844 |
| Biosample | SAMN04194207 |
| Sample Type | simple |
| Organism Taxid | 10090 |
| Organism | Mus musculus |
| Sample Name | GSM1911112 |
| Center Name | GEO |
| Submission | SRA305989 |
| Month | 12 |
| Year | 2015 |
| Author | Fields |
| Sample Source | Dendritic cells |
| Sample Title | BMDC footprints, cycloheximide-treated, 4 h LPS, replicate 1 |
| Library-Type | Ribo-Seq |
| Replicate-Number | 1.0 |
| Condition | Test |
| Inhibitor | Cycloheximide |
| Timepoint | 4h |
| Tissue | Bone |
| Cell-Line | Bone marrow-derived dendritic cells |
| Strain | C57BL/6J |
| Age | 6-8 weeks |
| Stimulation | 4 h LPS |
| Mode Of Rrna Depletion | Subtractive hybridization |
| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SRR2724727 | Mus musculus | Dendritic cells | Bone marrow-derived dendritic cells | Ribo-Seq | Cycloheximide |  |
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| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) |
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