SRR3488642 (PRJNA321057)
Processing Status: Completed
General Details
| Sample Name | GSM2147483 |
|---|---|
| Organism | Mus musculus |
| Release Date | 5/2016 |
Sample Links
| GWIPS-viz | Trips-Viz | Custom Track |
|---|---|---|
Run Details
| Spots | 43214857 |
|---|---|
| Total Bases | 2203957707 |
| Total Bases | 2203957707 |
Repository Details
| SRA | SRR3488642 |
|---|---|
| ENA | SRR3488642 |
| BioProject | PRJNA321057 |
Experiment Details
| Title | GFP/EV RiboSeq Replicate 3 |
|---|
Sample Details
| Run Accession | SRR3488642 |
|---|---|
| Total Number Of Spots (Original File)) | 43214857 |
| Total Number Of Bases (Original File) | 2203957707 |
| Average Read Length | 51 |
| Original File Size (Mb) | 1389 |
| Experiment Id | SRX1750680 |
| Library Strategy | OTHER |
| Library Selection | other |
| Library Source | TRANSCRIPTOMIC |
| Library Layout | SINGLE |
| Insert Size | 0 |
| Insert Deviation | 0 |
| Platform | ILLUMINA |
| Model | Illumina HiSeq 2500 |
| Sra Project Accession (Srp) | SRP074604 |
| Pubmed Id | 27220464 |
| Sample | SRS1428469 |
| Biosample | SAMN04964646 |
| Sample Type | simple |
| Organism Taxid | 10090 |
| Organism | Mus musculus |
| Sample Name | GSM2147483 |
| Center Name | GEO |
| Submission | SRA424310 |
| Month | 5 |
| Year | 2016 |
| Author | Tiedje |
| Sample Source | macrophages |
| Sample Title | GFP/EV RiboSeq Replicate 3 |
| Library-Type | Ribo-Seq |
| Replicate-Number | 3.0 |
| Condition | Wild Type |
| Tissue | Bone |
| Cell-Line | bone marrow-derived macrophages (BMDMs)_immortalized primary cells |
| Plasmid | GFP vector |
| Stimulation | 6h Doxycycline/1h LPS |
| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SRR3488642 | Mus musculus | macrophages | bone marrow-derived macrophages (BMDMs)_immortalized primary cells | Ribo-Seq |  |
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| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) |
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