SRR392989 (PRJNA150397)

Processing Status: Completed

General Details

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Sample Name GSM854433
Organism Danio rerio
Release Date 3/2012

Sample Links

Run Details

Spots 6307324
Total Bases 454127328
Total Bases 454127328

Repository Details

SRA SRR392989
ENA SRR392989
BioProject PRJNA150397

Experiment Details

Title Ribosome protected fragments MZdicer 2hpf-2

Sample Details

Run Accession SRR392989
Total Number Of Spots (Original File)) 6307324
Total Number Of Bases (Original File) 454127328
Average Read Length 72
Original File Size (Mb) 309
Experiment Id SRX113351
Library Name GSM854433: Ribosome protected fragments MZdicer 2hpf-2
Library Strategy RNA-Seq
Library Selection cDNA
Library Source TRANSCRIPTOMIC
Library Layout SINGLE
Insert Size 0
Insert Deviation 0
Platform ILLUMINA
Model Illumina Genome Analyzer II
Sra Project Accession (Srp) SRP010040
Pubmed Id 22422859
Sample SRS284295
Biosample SAMN00769039
Sample Type simple
Organism Taxid 7955
Organism Danio rerio
Sample Name GSM854433
Center Name GEO
Submission SRA048903
Month 3
Year 2012
Author Bazzini
Sample Source Whole embryo, MZdicer
Sample Title Ribosome protected fragments MZdicer 2hpf-2
Library-Type Ribo-Seq
Condition MZ
Timepoint 2h
Tissue Embryo
Stage 4hpf
Genotype MZdicer mutantTUAB
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)
SRR392989 Danio rerio Whole embryo, MZdicer Ribo-Seq
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)

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