SRR392999 (PRJNA150397)

Processing Status: Completed

General Details

View quality reports

Sample Name GSM854438
Organism Danio rerio
Release Date 3/2012

Sample Links

Run Details

Spots 16638716
Total Bases 1197987552
Total Bases 1197987552

Repository Details

SRA SRR392999
ENA SRR392999
BioProject PRJNA150397

Experiment Details

Title Ribosome protected fragments Wild type 2hpf

Sample Details

Run Accession SRR392999
Total Number Of Spots (Original File)) 16638716
Total Number Of Bases (Original File) 1197987552
Average Read Length 72
Original File Size (Mb) 804
Experiment Id SRX113356
Library Name GSM854438: Ribosome protected fragments Wild type 2hpf
Library Strategy RNA-Seq
Library Selection cDNA
Library Source TRANSCRIPTOMIC
Library Layout SINGLE
Insert Size 0
Insert Deviation 0
Platform ILLUMINA
Model Illumina Genome Analyzer II
Sra Project Accession (Srp) SRP010040
Pubmed Id 22422859
Sample SRS284300
Biosample SAMN00769044
Sample Type simple
Organism Taxid 7955
Organism Danio rerio
Sample Name GSM854438
Center Name GEO
Submission SRA048903
Month 3
Year 2012
Author Bazzini
Sample Source Whole embryo, wild type
Sample Title Ribosome protected fragments Wild type 2hpf
Library-Type Ribo-Seq
Condition Wild Type
Timepoint 2h
Tissue Embryo
Stage 2hpf
Genotype MZdicer mutant
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)
SRR392999 Danio rerio Whole embryo, wild type Ribo-Seq
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)

ⓘ For more Information on the columns shown here see: About