SRR393000 (PRJNA150397)

Processing Status: Completed

General Details

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Sample Name GSM854439
Organism Danio rerio
Release Date 3/2012

Sample Links

Run Details

Spots 3014109
Total Bases 217015848
Total Bases 217015848

Repository Details

SRA SRR393000
ENA SRR393000
BioProject PRJNA150397

Experiment Details

Title Ribosome protected fragments Wild type 2hpf-2

Sample Details

Run Accession SRR393000
Total Number Of Spots (Original File)) 3014109
Total Number Of Bases (Original File) 217015848
Average Read Length 72
Original File Size (Mb) 149
Experiment Id SRX113357
Library Name GSM854439: Ribosome protected fragments Wild type 2hpf-2
Library Strategy RNA-Seq
Library Selection cDNA
Library Source TRANSCRIPTOMIC
Library Layout SINGLE
Insert Size 0
Insert Deviation 0
Platform ILLUMINA
Model Illumina Genome Analyzer II
Sra Project Accession (Srp) SRP010040
Pubmed Id 22422859
Sample SRS284301
Biosample SAMN00769045
Sample Type simple
Organism Taxid 7955
Organism Danio rerio
Sample Name GSM854439
Center Name GEO
Submission SRA048903
Month 3
Year 2012
Author Bazzini
Sample Source Whole embryo, wild type
Sample Title Ribosome protected fragments Wild type 2hpf-2
Library-Type Ribo-Seq
Condition Wild Type
Timepoint 2h
Tissue Embryo
Stage 4hpf
Genotype MZdicer mutant
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)
SRR393000 Danio rerio Whole embryo, wild type Ribo-Seq
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)

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