SRR393001 (PRJNA150397)

Processing Status: Completed

General Details

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Sample Name GSM854439
Organism Danio rerio
Release Date 3/2012

Sample Links

Run Details

Spots 13566734
Total Bases 976804848
Total Bases 976804848

Repository Details

SRA SRR393001
ENA SRR393001
BioProject PRJNA150397

Experiment Details

Title Ribosome protected fragments Wild type 2hpf-2

Sample Details

Run Accession SRR393001
Total Number Of Spots (Original File)) 13566734
Total Number Of Bases (Original File) 976804848
Average Read Length 72
Original File Size (Mb) 659
Experiment Id SRX113357
Library Name GSM854439: Ribosome protected fragments Wild type 2hpf-2
Library Strategy RNA-Seq
Library Selection cDNA
Library Source TRANSCRIPTOMIC
Library Layout SINGLE
Insert Size 0
Insert Deviation 0
Platform ILLUMINA
Model Illumina Genome Analyzer II
Sra Project Accession (Srp) SRP010040
Pubmed Id 22422859
Sample SRS284301
Biosample SAMN00769045
Sample Type simple
Organism Taxid 7955
Organism Danio rerio
Sample Name GSM854439
Center Name GEO
Submission SRA048903
Month 3
Year 2012
Author Bazzini
Sample Source Whole embryo, wild type
Sample Title Ribosome protected fragments Wild type 2hpf-2
Library-Type Ribo-Seq
Condition Wild Type
Timepoint 2h
Tissue Embryo
Stage 4hpf
Genotype MZdicer mutant
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)
SRR393001 Danio rerio Whole embryo, wild type Ribo-Seq
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)

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