SRR393002 (PRJNA150397)

Processing Status: Completed

General Details

View quality reports

Sample Name GSM854440
Organism Danio rerio
Release Date 3/2012

Sample Links

Run Details

Spots 4037991
Total Bases 290735352
Total Bases 290735352

Repository Details

SRA SRR393002
ENA SRR393002
BioProject PRJNA150397

Experiment Details

Title Ribosome protected fragments Wild type 4hpf

Sample Details

Run Accession SRR393002
Total Number Of Spots (Original File)) 4037991
Total Number Of Bases (Original File) 290735352
Average Read Length 72
Original File Size (Mb) 195
Experiment Id SRX113358
Library Name GSM854440: Ribosome protected fragments Wild type 4hpf
Library Strategy RNA-Seq
Library Selection cDNA
Library Source TRANSCRIPTOMIC
Library Layout SINGLE
Insert Size 0
Insert Deviation 0
Platform ILLUMINA
Model Illumina Genome Analyzer II
Sra Project Accession (Srp) SRP010040
Pubmed Id 22422859
Sample SRS284302
Biosample SAMN00769046
Sample Type simple
Organism Taxid 7955
Organism Danio rerio
Sample Name GSM854440
Center Name GEO
Submission SRA048903
Month 3
Year 2012
Author Bazzini
Sample Source Whole embryo, wild type
Sample Title Ribosome protected fragments Wild type 4hpf
Library-Type Ribo-Seq
Condition Wild Type
Timepoint 4h
Tissue Embryo
Stage 6hpf
Genotype MZdicer mutant
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)
SRR393002 Danio rerio Whole embryo, wild type Ribo-Seq
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)

ⓘ For more Information on the columns shown here see: About