SRR393002 (PRJNA150397)
Processing Status: Completed
General Details
| Sample Name | GSM854440 |
|---|---|
| Organism | Danio rerio |
| Release Date | 3/2012 |
Sample Links
| GWIPS-viz | Trips-Viz | Custom Track |
|---|---|---|
Run Details
| Spots | 4037991 |
|---|---|
| Total Bases | 290735352 |
| Total Bases | 290735352 |
Repository Details
| SRA | SRR393002 |
|---|---|
| ENA | SRR393002 |
| BioProject | PRJNA150397 |
Experiment Details
| Title | Ribosome protected fragments Wild type 4hpf |
|---|
Sample Details
| Run Accession | SRR393002 |
|---|---|
| Total Number Of Spots (Original File)) | 4037991 |
| Total Number Of Bases (Original File) | 290735352 |
| Average Read Length | 72 |
| Original File Size (Mb) | 195 |
| Experiment Id | SRX113358 |
| Library Name | GSM854440: Ribosome protected fragments Wild type 4hpf |
| Library Strategy | RNA-Seq |
| Library Selection | cDNA |
| Library Source | TRANSCRIPTOMIC |
| Library Layout | SINGLE |
| Insert Size | 0 |
| Insert Deviation | 0 |
| Platform | ILLUMINA |
| Model | Illumina Genome Analyzer II |
| Sra Project Accession (Srp) | SRP010040 |
| Pubmed Id | 22422859 |
| Sample | SRS284302 |
| Biosample | SAMN00769046 |
| Sample Type | simple |
| Organism Taxid | 7955 |
| Organism | Danio rerio |
| Sample Name | GSM854440 |
| Center Name | GEO |
| Submission | SRA048903 |
| Month | 3 |
| Year | 2012 |
| Author | Bazzini |
| Sample Source | Whole embryo, wild type |
| Sample Title | Ribosome protected fragments Wild type 4hpf |
| Library-Type | Ribo-Seq |
| Replicate-Number | 0.0 |
| Condition | Wild Type |
| Inhibitor | 0.0 |
| Timepoint | 4h |
| Tissue | Embryo |
| Cell-Line | 0.0 |
| Cellular-Compartment | 0.0 |
| Stage | 6hpf |
| Gene | 0.0 |
| Sex | 0.0 |
| Strain | 0.0 |
| Age | 0.0 |
| Infected | 0.0 |
| Disease | 0.0 |
| Genotype | MZdicer mutant |
| Feeding | 0.0 |
| Temperature | 0.0 |
| Sirna | 0.0 |
| Sgrna | 0.0 |
| Shrna | 0.0 |
| Plasmid | 0.0 |
| Growth-Condition | 0.0 |
| Stress | 0.0 |
| Cancer | 0.0 |
| Microrna | 0.0 |
| Individual | 0.0 |
| Antibody Used | 0.0 |
| Ethnicity | 0.0 |
| Dose | 0.0 |
| Stimulation | 0.0 |
| Host Organism | 0.0 |
| Unique Molecular Identifier (Umi) | 0.0 |
| Adapter Sequence | 0.0 |
| Mode Of Separation | 0.0 |
| Mode Of Rrna Depletion | 0.0 |
| Barcode Information | 0.0 |
| Nucelase Used | 0.0 |
| Kit Used | 0.0 |
| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SRR393002 | Danio rerio | Whole embryo, wild type | 0.0 | Ribo-Seq | 0.0 |  |
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| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) |
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