SRR393005 (PRJNA150397)

Processing Status: Completed

General Details

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Sample Name GSM854441
Organism Danio rerio
Release Date 3/2012

Sample Links

Run Details

Spots 9836111
Total Bases 708199992
Total Bases 708199992

Repository Details

SRA SRR393005
ENA SRR393005
BioProject PRJNA150397

Experiment Details

Title Ribosome protected fragments Wild type 4hpf-2

Sample Details

Run Accession SRR393005
Total Number Of Spots (Original File)) 9836111
Total Number Of Bases (Original File) 708199992
Average Read Length 72
Original File Size (Mb) 489
Experiment Id SRX113359
Library Name GSM854441: Ribosome protected fragments Wild type 4hpf-2
Library Strategy RNA-Seq
Library Selection cDNA
Library Source TRANSCRIPTOMIC
Library Layout SINGLE
Insert Size 0
Insert Deviation 0
Platform ILLUMINA
Model Illumina Genome Analyzer II
Sra Project Accession (Srp) SRP010040
Pubmed Id 22422859
Sample SRS284303
Biosample SAMN00769047
Sample Type simple
Organism Taxid 7955
Organism Danio rerio
Sample Name GSM854441
Center Name GEO
Submission SRA048903
Month 3
Year 2012
Author Bazzini
Sample Source Whole embryo, wild type
Sample Title Ribosome protected fragments Wild type 4hpf-2
Library-Type Ribo-Seq
Condition Wild Type
Timepoint 4h
Tissue Embryo
Stage 2hpf
Genotype wild type
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)
SRR393005 Danio rerio Whole embryo, wild type Ribo-Seq
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)

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