SRR393006 (PRJNA150397)

Processing Status: Completed

General Details

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Sample Name GSM854442
Organism Danio rerio
Release Date 3/2012

Sample Links

Run Details

Spots 4492941
Total Bases 323491752
Total Bases 323491752

Repository Details

SRA SRR393006
ENA SRR393006
BioProject PRJNA150397

Experiment Details

Title Ribosome protected fragments Wild type 6hpf

Sample Details

Run Accession SRR393006
Total Number Of Spots (Original File)) 4492941
Total Number Of Bases (Original File) 323491752
Average Read Length 72
Original File Size (Mb) 206
Experiment Id SRX113360
Library Name GSM854442: Ribosome protected fragments Wild type 6hpf
Library Strategy RNA-Seq
Library Selection cDNA
Library Source TRANSCRIPTOMIC
Library Layout SINGLE
Insert Size 0
Insert Deviation 0
Platform ILLUMINA
Model Illumina Genome Analyzer II
Sra Project Accession (Srp) SRP010040
Pubmed Id 22422859
Sample SRS284304
Biosample SAMN00769048
Sample Type simple
Organism Taxid 7955
Organism Danio rerio
Sample Name GSM854442
Center Name GEO
Submission SRA048903
Month 3
Year 2012
Author Bazzini
Sample Source Whole embryo, wild type
Sample Title Ribosome protected fragments Wild type 6hpf
Library-Type Ribo-Seq
Condition Wild Type
Timepoint 6h
Tissue Embryo
Stage 4hpf
Genotype wild type
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)
SRR393006 Danio rerio Whole embryo, wild type Ribo-Seq
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)

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