SRR393009 (PRJNA150397)
Processing Status: Completed
General Details
| Sample Name | GSM854443 |
|---|---|
| Organism | Danio rerio |
| Release Date | 3/2012 |
Sample Links
| GWIPS-viz | Trips-Viz | Custom Track |
|---|---|---|
| Visit Trips-Viz | Visit GWIPS-viz |
Run Details
| Spots | 14143962 |
|---|---|
| Total Bases | 1018365264 |
| Total Bases | 1018365264 |
Repository Details
| SRA | SRR393009 |
|---|---|
| ENA | SRR393009 |
| BioProject | PRJNA150397 |
Experiment Details
| Title | Ribosome protected fragments Wild type 6hpf-2 |
|---|
Sample Details
| Run Accession | SRR393009 |
|---|---|
| Total Number Of Spots (Original File)) | 14143962 |
| Total Number Of Bases (Original File) | 1018365264 |
| Average Read Length | 72 |
| Original File Size (Mb) | 661 |
| Experiment Id | SRX113361 |
| Library Name | GSM854443: Ribosome protected fragments Wild type 6hpf-2 |
| Library Strategy | RNA-Seq |
| Library Selection | cDNA |
| Library Source | TRANSCRIPTOMIC |
| Library Layout | SINGLE |
| Insert Size | 0 |
| Insert Deviation | 0 |
| Platform | ILLUMINA |
| Model | Illumina Genome Analyzer II |
| Sra Project Accession (Srp) | SRP010040 |
| Pubmed Id | 22422859 |
| Sample | SRS284305 |
| Biosample | SAMN00769049 |
| Sample Type | simple |
| Organism Taxid | 7955 |
| Organism | Danio rerio |
| Sample Name | GSM854443 |
| Center Name | GEO |
| Submission | SRA048903 |
| Month | 3 |
| Year | 2012 |
| Author | Bazzini |
| Sample Source | Whole embryo, wild type |
| Sample Title | Ribosome protected fragments Wild type 6hpf-2 |
| Library-Type | Ribo-Seq |
| Condition | Wild Type |
| Timepoint | 6h |
| Tissue | Embryo |
| Stage | 6hpf |
| Genotype | wild type |
| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SRR393009 | Danio rerio | Whole embryo, wild type | Ribo-Seq |  |
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| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) |
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