SRR4293693 (PRJNA344393)

General Details

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Sample Name GSM2327825
Organism Homo sapiens
Release Date 1/2017

Sample Links

Run Details

Spots 178964457
Total Bases 13601298732
Total Bases 13601298732

Repository Details

SRA SRR4293693
ENA SRR4293693
BioProject PRJNA344393

Experiment Details

Title Ribosome profiling of HCT116 cells upon eIF1 knockdown treated with lactimidomycin

Sample Details

Run Accession SRR4293693
Total Number Of Spots (Original File)) 178964457
Total Number Of Bases (Original File) 13601298732
Average Read Length 76
Original File Size (Mb) 6053
Experiment Id SRX2189156
Library Strategy OTHER
Library Selection other
Library Source TRANSCRIPTOMIC
Library Layout SINGLE
Insert Size 0
Insert Deviation 0
Platform ILLUMINA
Model NextSeq 500
Sra Project Accession (Srp) SRP090415
Pubmed Id 28541577
Sample SRS1711882
Biosample SAMN05821926
Sample Type simple
Organism Taxid 9606
Organism Homo sapiens
Sample Name GSM2327825
Center Name GEO
Submission SRA478929
Month 1
Year 2017
Author Fijalkowska
Sample Source colorectal carcinoma cell line
Sample Title Ribosome profiling of HCT116 cells upon eIF1 knockdown treated with lactimidomycin
Library-Type Ribo-Seq
Condition KD
Inhibitor Lactimidomycin
Tissue Colon
Cell-Line HCT116
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)
SRR4293693 Homo sapiens colorectal carcinoma cell line HCT116 Ribo-Seq Lactimidomycin
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)

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