SRR4293694 (PRJNA344393)
Processing Status: Completed
General Details
| Sample Name | GSM2327826 |
|---|---|
| Organism | Homo sapiens |
| Release Date | 1/2017 |
Sample Links
| GWIPS-viz | Trips-Viz | Custom Track |
|---|---|---|
| Visit Trips-Viz | Visit GWIPS-viz |
Run Details
| Spots | 184823119 |
|---|---|
| Total Bases | 14046557044 |
| Total Bases | 14046557044 |
Repository Details
| SRA | SRR4293694 |
|---|---|
| ENA | SRR4293694 |
| BioProject | PRJNA344393 |
Experiment Details
| Title | Ribosome profiling of HCT116 cells upon eIF1 knockdown treated with cycloheximide |
|---|
Sample Details
| Run Accession | SRR4293694 |
|---|---|
| Total Number Of Spots (Original File)) | 184823119 |
| Total Number Of Bases (Original File) | 14046557044 |
| Average Read Length | 76 |
| Original File Size (Mb) | 6216 |
| Experiment Id | SRX2189157 |
| Library Strategy | OTHER |
| Library Selection | other |
| Library Source | TRANSCRIPTOMIC |
| Library Layout | SINGLE |
| Insert Size | 0 |
| Insert Deviation | 0 |
| Platform | ILLUMINA |
| Model | NextSeq 500 |
| Sra Project Accession (Srp) | SRP090415 |
| Pubmed Id | 28541577 |
| Sample | SRS1711878 |
| Biosample | SAMN05821925 |
| Sample Type | simple |
| Organism Taxid | 9606 |
| Organism | Homo sapiens |
| Sample Name | GSM2327826 |
| Center Name | GEO |
| Submission | SRA478929 |
| Month | 1 |
| Year | 2017 |
| Author | Fijalkowska |
| Sample Source | colorectal carcinoma cell line |
| Sample Title | Ribosome profiling of HCT116 cells upon eIF1 knockdown treated with cycloheximide |
| Library-Type | Ribo-Seq |
| Condition | KD |
| Inhibitor | Cycloheximide |
| Tissue | Colon |
| Cell-Line | HCT116 |
| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SRR4293694 | Homo sapiens | colorectal carcinoma cell line | HCT116 | Ribo-Seq | Cycloheximide |  |
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| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) |
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