SRR449475 (PRJNA157105)

Processing Status: Completed

General Details

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Sample Name GSM904901
Organism Mus musculus
Release Date 5/2012

Sample Links

Run Details

Spots 7896394
Total Bases 284270184
Total Bases 284270184

Repository Details

SRA SRR449475
ENA SRR449475
BioProject PRJNA157105

Experiment Details

Title Footprint for vehicle-treated wild-type MEFs Replicate 2

Sample Details

Run Accession SRR449475
Total Number Of Spots (Original File)) 7896394
Total Number Of Bases (Original File) 284270184
Average Read Length 36
Original File Size (Mb) 176
Experiment Id SRX132049
Library Name GSM904901: Footprint for vehicle-treated wild-type MEFs Replicate 2
Library Strategy RNA-Seq
Library Selection cDNA
Library Source TRANSCRIPTOMIC
Library Layout SINGLE
Insert Size 0
Insert Deviation 0
Platform ILLUMINA
Model Illumina Genome Analyzer II
Sra Project Accession (Srp) SRP011987
Pubmed Id 22552098
Sample SRS306590
Biosample SAMN00847501
Sample Type simple
Organism Taxid 10090
Organism Mus musculus
Sample Name GSM904901
Center Name GEO
Submission SRA051335
Month 5
Year 2012
Author Thoreen
Sample Source Cell culture
Sample Title Footprint for vehicle-treated wild-type MEFs Replicate 2
Library-Type Ribo-Seq
Replicate-Number 2.0
Condition Wild Type
Tissue Embryo
Cell-Line Fibroblast
Genotype 4EBP1/2 +/+ p53 -/-129/Svj1
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)
SRR449475 Mus musculus Cell culture Fibroblast Ribo-Seq
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)

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