SRR458757 (PRJNA158351)
Processing Status: Completed
General Details
| Sample Name | GSM910954 |
|---|---|
| Organism | Mus musculus |
| Release Date | 10/2012 |
Sample Links
| GWIPS-viz | Trips-Viz | Custom Track |
|---|---|---|
Run Details
| Spots | 18520372 |
|---|---|
| Total Bases | 666733392 |
| Total Bases | 666733392 |
Repository Details
| SRA | SRR458757 |
|---|---|
| ENA | SRR458757 |
| BioProject | PRJNA158351 |
Experiment Details
| Title | A3-1 Ribosome profiling - siLin28a |
|---|
Sample Details
| Run Accession | SRR458757 |
|---|---|
| Total Number Of Spots (Original File)) | 18520372 |
| Total Number Of Bases (Original File) | 666733392 |
| Average Read Length | 36 |
| Original File Size (Mb) | 337 |
| Experiment Id | SRX137371 |
| Library Name | GSM910954: A3-1 Ribosome profiling - siLin28a |
| Library Strategy | OTHER |
| Library Selection | other |
| Library Source | TRANSCRIPTOMIC |
| Library Layout | SINGLE |
| Insert Size | 0 |
| Insert Deviation | 0 |
| Platform | ILLUMINA |
| Model | Illumina Genome Analyzer II |
| Sra Project Accession (Srp) | SRP012118 |
| Pubmed Id | 23102813 |
| Sample | SRS308447 |
| Biosample | SAMN00854340 |
| Sample Type | simple |
| Organism Taxid | 10090 |
| Organism | Mus musculus |
| Sample Name | GSM910954 |
| Center Name | GEO |
| Submission | SRA051495 |
| Month | 10 |
| Year | 2012 |
| Author | Cho |
| Sample Source | mouse embryonic stem cell |
| Sample Title | A3-1 Ribosome profiling - siLin28a |
| Library-Type | Ribo-Seq |
| Condition | Test |
| Cell-Line | A3-1 |
| Sirna | AUGUUCUUCCCUUUUGGCCdTdT/GGCCAAAAGGGAAGAACAUdTdT |
| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SRR458757 | Mus musculus | mouse embryonic stem cell | A3-1 | Ribo-Seq |  |
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| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) |
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