SRR5742254 (PRJNA391480)

Processing Status: Completed

General Details

View quality reports

Sample Name GSM2679700
Organism Escherichia coli
Release Date 4/2018

Sample Links

Run Details

Spots 33925489
Total Bases 1730199939
Total Bases 1730199939

Repository Details

SRA SRR5742254
ENA SRR5742254
BioProject PRJNA391480

Experiment Details

Title Hfq mut exp RPF

Sample Details

Run Accession SRR5742254
Total Number Of Spots (Original File)) 33925489
Total Number Of Bases (Original File) 1730199939
Average Read Length 51
Original File Size (Mb) 1046
Experiment Id SRX2947196
Library Name 0.0
Library Strategy RNA-Seq
Library Selection cDNA
Library Source TRANSCRIPTOMIC
Library Layout SINGLE
Insert Size 0
Insert Deviation 0
Platform ILLUMINA
Model Illumina HiSeq 2000
Sra Project Accession (Srp) SRP110169
Pubmed Id 29669858
Sample SRS2306466
Biosample SAMN07269357
Sample Type simple
Organism Taxid 562
Organism Escherichia coli
Sample Name GSM2679700
Center Name GEO
Submission SRA579627
Month 4
Year 2018
Author Andrade
Sample Source E. coli CMA540(MG1693 ∆hfq::cat)
Sample Title Hfq mut exp RPF
Library-Type Ribo-Seq
Replicate-Number 0.0
Condition Test
Inhibitor 0.0
Timepoint NANA
Tissue 0.0
Cell-Line 0.0
Cellular-Compartment 0.0
Stage Exponential
Gene 0.0
Sex 0.0
Strain CMA540(MG1693 delta_hfq::cat)
Age 0.0
Infected 0.0
Disease 0.0
Genotype 0.0
Feeding 0.0
Temperature 0.0
Sirna 0.0
Sgrna 0.0
Shrna 0.0
Plasmid 0.0
Growth-Condition 0.0
Stress 0.0
Cancer 0.0
Microrna 0.0
Individual 0.0
Antibody Used 0.0
Ethnicity 0.0
Dose 0.0
Stimulation 0.0
Host Organism 0.0
Unique Molecular Identifier (Umi) 0.0
Adapter Sequence 0.0
Mode Of Separation 0.0
Mode Of Rrna Depletion 0.0
Barcode Information 0.0
Nucelase Used 0.0
Kit Used 0.0
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)
SRR5742254 Escherichia coli E. coli CMA540(MG1693 ∆hfq::cat) 0.0 Ribo-Seq 0.0
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)

ⓘ For more Information on the columns shown here see: About