SRR6841604 (PRJNA438489)
Processing Status: Completed
General Details
| Sample Name | GSM3043640 |
|---|---|
| Organism | Mus musculus |
| Release Date | 6/2018 |
Sample Links
| GWIPS-viz | Trips-Viz | Custom Track |
|---|---|---|
| Visit Trips-Viz | Visit GWIPS-viz |
Run Details
| Spots | 26746208 |
|---|---|
| Total Bases | 779690538 |
| Total Bases | 779690538 |
Repository Details
| SRA | SRR6841604 |
|---|---|
| ENA | SRR6841604 |
| BioProject | PRJNA438489 |
Experiment Details
| Title | Ribosome-Protected Fragments - shCTL - Replicate A |
|---|
Sample Details
| Run Accession | SRR6841604 |
|---|---|
| Total Number Of Spots (Original File)) | 26746208 |
| Total Number Of Bases (Original File) | 779690538 |
| Average Read Length | 29 |
| Original File Size (Mb) | 346 |
| Experiment Id | SRX3797431 |
| Library Strategy | OTHER |
| Library Selection | other |
| Library Source | TRANSCRIPTOMIC |
| Library Layout | SINGLE |
| Insert Size | 0 |
| Insert Deviation | 0 |
| Platform | ILLUMINA |
| Model | NextSeq 500 |
| Sra Project Accession (Srp) | SRP135781 |
| Pubmed Id | 29925953 |
| Sample | SRS3049489 |
| Biosample | SAMN08717857 |
| Sample Type | simple |
| Organism Taxid | 10090 |
| Organism | Mus musculus |
| Sample Name | GSM3043640 |
| Center Name | GEO |
| Submission | SRA666803 |
| Month | 6 |
| Year | 2018 |
| Author | Rapino |
| Sample Source | B16 melanoma cell line |
| Sample Title | Ribosome-Protected Fragments - shCTL - Replicate A |
| Library-Type | Ribo-Seq |
| Replicate-Number | 1.0 |
| Cell-Line | B16melanoma cell line |
| Cellular-Compartment | Ribosome-protected fragments |
| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SRR6841604 | Mus musculus | B16 melanoma cell line | B16melanoma cell line | Ribo-Seq |  |
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| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) |
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