SRR8558084 (PRJNA521751)

Processing Status: Completed

General Details

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Sample Name GSM3597566
Organism Homo sapiens
Release Date 10/2019

Sample Links

Run Details

Spots 386563970
Total Bases 28992297750
Total Bases 28992297750

Repository Details

SRA SRR8558084
ENA SRR8558084
BioProject PRJNA521751

Experiment Details

Title RIBOSEQ-Upf1-KO-1

Sample Details

Run Accession SRR8558084
Total Number Of Spots (Original File)) 386563970
Total Number Of Bases (Original File) 28992297750
Average Read Length 75
Original File Size (Mb) 10349
Experiment Id SRX5359744
Library Strategy OTHER
Library Selection other
Library Source TRANSCRIPTOMIC
Library Layout SINGLE
Insert Size 0
Insert Deviation 0
Platform ILLUMINA
Model NextSeq 500
Sra Project Accession (Srp) SRP185496
Pubmed Id 31619139
Sample SRS4350378
Biosample SAMN10910527
Sample Type simple
Organism Taxid 9606
Organism Homo sapiens
Sample Name GSM3597566
Center Name GEO
Submission SRA848188
Month 10
Year 2019
Author Aliouat
Sample Source colon cancer cell line
Sample Title RIBOSEQ-Upf1-KO-1
Library-Type Ribo-Seq
Condition KO
Inhibitor Cycloheximide
Tissue Colon
Cell-Line HCT116
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)
SRR8558084 Homo sapiens colon cancer cell line HCT116 Ribo-Seq Cycloheximide
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)

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