SRR8558084 (PRJNA521751)
General Details
| Sample Name | GSM3597566 |
|---|---|
| Organism | Homo sapiens |
| Release Date | 10/2019 |
Sample Links
| GWIPS-viz | Trips-Viz | Custom Track |
|---|---|---|
Run Details
| Spots | 386563970 |
|---|---|
| Total Bases | 28992297750 |
| Total Bases | 28992297750 |
Repository Details
| SRA | SRR8558084 |
|---|---|
| ENA | SRR8558084 |
| BioProject | PRJNA521751 |
Experiment Details
| Title | RIBOSEQ-Upf1-KO-1 |
|---|
Sample Details
| Run Accession | SRR8558084 |
|---|---|
| Total Number Of Spots (Original File)) | 386563970 |
| Total Number Of Bases (Original File) | 28992297750 |
| Average Read Length | 75 |
| Original File Size (Mb) | 10349 |
| Experiment Id | SRX5359744 |
| Library Strategy | OTHER |
| Library Selection | other |
| Library Source | TRANSCRIPTOMIC |
| Library Layout | SINGLE |
| Insert Size | 0 |
| Insert Deviation | 0 |
| Platform | ILLUMINA |
| Model | NextSeq 500 |
| Sra Project Accession (Srp) | SRP185496 |
| Pubmed Id | 31619139 |
| Sample | SRS4350378 |
| Biosample | SAMN10910527 |
| Sample Type | simple |
| Organism Taxid | 9606 |
| Organism | Homo sapiens |
| Sample Name | GSM3597566 |
| Center Name | GEO |
| Submission | SRA848188 |
| Month | 10 |
| Year | 2019 |
| Author | Aliouat |
| Sample Source | colon cancer cell line |
| Sample Title | RIBOSEQ-Upf1-KO-1 |
| Library-Type | Ribo-Seq |
| Condition | KO |
| Inhibitor | Cycloheximide |
| Tissue | Colon |
| Cell-Line | HCT116 |
| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SRR8558084 | Homo sapiens | colon cancer cell line | HCT116 | Ribo-Seq | Cycloheximide |  |
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| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) |
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