SRR8558085 (PRJNA521751)

Processing Status: Completed

General Details

View quality reports

Sample Name GSM3597567
Organism Homo sapiens
Release Date 10/2019

Sample Links

Run Details

Spots 444079333
Total Bases 33305949975
Total Bases 33305949975

Repository Details

SRA SRR8558085
ENA SRR8558085
BioProject PRJNA521751

Experiment Details

Title RIBOSEQ-Upf1-KO-2

Sample Details

Run Accession SRR8558085
Total Number Of Spots (Original File)) 444079333
Total Number Of Bases (Original File) 33305949975
Average Read Length 75
Original File Size (Mb) 11545
Experiment Id SRX5359745
Library Strategy OTHER
Library Selection other
Library Source TRANSCRIPTOMIC
Library Layout SINGLE
Insert Size 0
Insert Deviation 0
Platform ILLUMINA
Model NextSeq 500
Sra Project Accession (Srp) SRP185496
Pubmed Id 31619139
Sample SRS4350379
Biosample SAMN10910526
Sample Type simple
Organism Taxid 9606
Organism Homo sapiens
Sample Name GSM3597567
Center Name GEO
Submission SRA848188
Month 10
Year 2019
Author Aliouat
Sample Source colon cancer cell line
Sample Title RIBOSEQ-Upf1-KO-2
Library-Type Ribo-Seq
Condition KO
Inhibitor Cycloheximide
Tissue Colon
Cell-Line HCT116
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)
SRR8558085 Homo sapiens colon cancer cell line HCT116 Ribo-Seq Cycloheximide
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)

ⓘ For more Information on the columns shown here see: About