SRR8590800 (PRJNA523167)
Processing Status: Completed
General Details
| Sample Name | GSM3611946 |
|---|---|
| Organism | Homo sapiens |
| Release Date | 12/2019 |
Sample Links
| GWIPS-viz | Trips-Viz | Custom Track |
|---|---|---|
| Visit Trips-Viz |
Run Details
| Spots | 8425713 |
|---|---|
| Total Bases | 513968493 |
| Total Bases | 513968493 |
Repository Details
| SRA | SRR8590800 |
|---|---|
| ENA | SRR8590800 |
| BioProject | PRJNA523167 |
Experiment Details
| Title | SUM159PT Serum Deprived 1 hour ribosome protected fragments |
|---|
Sample Details
| Run Accession | SRR8590800 |
|---|---|
| Total Number Of Spots (Original File)) | 8425713 |
| Total Number Of Bases (Original File) | 513968493 |
| Average Read Length | 61 |
| Original File Size (Mb) | 199 |
| Experiment Id | SRX5391059 |
| Library Strategy | RNA-Seq |
| Library Selection | cDNA |
| Library Source | TRANSCRIPTOMIC |
| Library Layout | SINGLE |
| Insert Size | 0 |
| Insert Deviation | 0 |
| Platform | ILLUMINA |
| Model | Illumina HiSeq 2500 |
| Sra Project Accession (Srp) | SRP186252 |
| Pubmed Id | 31911279 |
| Sample | SRS4379000 |
| Biosample | SAMN10965456 |
| Sample Type | simple |
| Organism Taxid | 9606 |
| Organism | Homo sapiens |
| Sample Name | GSM3611946 |
| Center Name | GEO |
| Submission | SRA850276 |
| Month | 12 |
| Year | 2019 |
| Author | Vaklavas |
| Sample Source | Human triple negative breast cancer |
| Sample Title | SUM159PT Serum Deprived 1 hour ribosome protected fragments |
| Library-Type | Ribo-Seq |
| Condition | High |
| Inhibitor | Cycloheximide |
| Tissue | Breast |
| Cell-Line | SUM159 |
| Cellular-Compartment | Endoplasmic reticulum |
| Stage | adult |
| Cancer | metastatic |
| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SRR8590800 | Homo sapiens | Human triple negative breast cancer | SUM159 | Ribo-Seq | Cycloheximide |  |
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| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) |
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