SRR870729 (PRJNA206070)

Processing Status: Completed

General Details

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Sample Name GSM1152437
Organism Danio rerio
Release Date 9/2013

Sample Links

Run Details

Spots 4000000
Total Bases 304000000
Total Bases 304000000

Repository Details

SRA SRR870729
ENA SRR870729
BioProject PRJNA206070

Experiment Details

Title WT ribosome protected fragments for Ribosome Profiling

Sample Details

Run Accession SRR870729
Total Number Of Spots (Original File)) 4000000
Total Number Of Bases (Original File) 304000000
Average Read Length 76
Original File Size (Mb) 187
Experiment Id SRX288475
Library Strategy OTHER
Library Selection other
Library Source TRANSCRIPTOMIC
Library Layout SINGLE
Insert Size 0
Insert Deviation 0
Platform ILLUMINA
Model Illumina HiSeq 2000
Sra Project Accession (Srp) SRP023492
Pubmed Id 24056933
Sample SRS431102
Biosample SAMN02183599
Sample Type simple
Organism Taxid 7955
Organism Danio rerio
Sample Name GSM1152437
Center Name GEO
Submission SRA082637
Month 9
Year 2013
Author Lee
Sample Source WT ribosome protected fragments for Ribosome Profiling
Sample Title WT ribosome protected fragments for Ribosome Profiling
Library-Type RNA-Seq
Condition Wild Type
Inhibitor alpha-amanitin
Timepoint 4h
Tissue Embryo
Stage 4hpf
Strain TUAB
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)
SRR870729 Danio rerio WT ribosome protected fragments for Ribosome Profiling RNA-Seq alpha-amanitin
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)

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