SRR870739 (PRJNA206070)
Processing Status: Completed
General Details
| Sample Name | GSM1152439 |
|---|---|
| Organism | Danio rerio |
| Release Date | 9/2013 |
Sample Links
| GWIPS-viz | Trips-Viz | Custom Track |
|---|---|---|
| Visit Trips-Viz | Visit GWIPS-viz |
Run Details
| Spots | 4000000 |
|---|---|
| Total Bases | 304000000 |
| Total Bases | 304000000 |
Repository Details
| SRA | SRR870739 |
|---|---|
| ENA | SRR870739 |
| BioProject | PRJNA206070 |
Experiment Details
| Title | Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling |
|---|
Sample Details
| Run Accession | SRR870739 |
|---|---|
| Total Number Of Spots (Original File)) | 4000000 |
| Total Number Of Bases (Original File) | 304000000 |
| Average Read Length | 76 |
| Original File Size (Mb) | 178 |
| Experiment Id | SRX288477 |
| Library Strategy | OTHER |
| Library Selection | other |
| Library Source | TRANSCRIPTOMIC |
| Library Layout | SINGLE |
| Insert Size | 0 |
| Insert Deviation | 0 |
| Platform | ILLUMINA |
| Model | Illumina HiSeq 2000 |
| Sra Project Accession (Srp) | SRP023492 |
| Pubmed Id | 24056933 |
| Sample | SRS431103 |
| Biosample | SAMN02183601 |
| Sample Type | simple |
| Organism Taxid | 7955 |
| Organism | Danio rerio |
| Sample Name | GSM1152439 |
| Center Name | GEO |
| Submission | SRA082637 |
| Month | 9 |
| Year | 2013 |
| Author | Lee |
| Sample Source | Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling |
| Sample Title | Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling |
| Library-Type | RNA-Seq |
| Condition | High |
| Inhibitor | untreated |
| Timepoint | 6h |
| Tissue | Embryo |
| Stage | 6hpf |
| Strain | TUAB |
| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SRR870739 | Danio rerio | Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling | RNA-Seq | untreated |  |
 |
 |
 |
|
|
|||
| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) |
ⓘ For more Information on the columns shown here see: About