SRR870746 (PRJNA206070)

Processing Status: Completed

General Details

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Sample Name GSM1152439
Organism Danio rerio
Release Date 9/2013

Sample Links

Run Details

Spots 4000000
Total Bases 304000000
Total Bases 304000000

Repository Details

SRA SRR870746
ENA SRR870746
BioProject PRJNA206070

Experiment Details

Title Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling

Sample Details

Run Accession SRR870746
Total Number Of Spots (Original File)) 4000000
Total Number Of Bases (Original File) 304000000
Average Read Length 76
Original File Size (Mb) 183
Experiment Id SRX288477
Library Strategy OTHER
Library Selection other
Library Source TRANSCRIPTOMIC
Library Layout SINGLE
Insert Size 0
Insert Deviation 0
Platform ILLUMINA
Model Illumina HiSeq 2000
Sra Project Accession (Srp) SRP023492
Pubmed Id 24056933
Sample SRS431103
Biosample SAMN02183601
Sample Type simple
Organism Taxid 7955
Organism Danio rerio
Sample Name GSM1152439
Center Name GEO
Submission SRA082637
Month 9
Year 2013
Author Lee
Sample Source Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling
Sample Title Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling
Library-Type RNA-Seq
Condition High
Inhibitor untreated
Timepoint 6h
Tissue Embryo
Stage 6hpf
Strain MZpou5f1 {hi349Tg/hi349Tg}
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)
SRR870746 Danio rerio Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling RNA-Seq untreated
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)

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