SRR10382044 (PRJNA548784)
Processing Status: Completed
General Details
| Sample Name | GSM4146394 |
|---|---|
| Organism | Homo sapiens |
| Release Date | 2/2020 |
Sample Links
| GWIPS-viz | Trips-Viz | Custom Track |
|---|---|---|
Run Details
| Spots | 6183973 |
|---|---|
| Total Bases | 173188073 |
| Total Bases | 173188073 |
Repository Details
| SRA | SRR10382044 |
|---|---|
| ENA | SRR10382044 |
| BioProject | PRJNA548784 |
Experiment Details
| Title | larp1dko_dmso_RPF_rep2_reseq |
|---|
Sample Details
| Run Accession | SRR10382044 |
|---|---|
| Total Number Of Spots (Original File)) | 6183973 |
| Total Number Of Bases (Original File) | 173188073 |
| Average Read Length | 28 |
| Original File Size (Mb) | 315 |
| Experiment Id | SRX7082854 |
| Library Name | 0.0 |
| Library Strategy | OTHER |
| Library Selection | other |
| Library Source | TRANSCRIPTOMIC |
| Library Layout | SINGLE |
| Insert Size | 0 |
| Insert Deviation | 0 |
| Platform | ILLUMINA |
| Model | Illumina HiSeq 2500 |
| Sra Project Accession (Srp) | SRP201361 |
| Pubmed Id | 32094190 |
| Sample | SRS5598476 |
| Biosample | SAMN13174471 |
| Sample Type | simple |
| Organism Taxid | 9606 |
| Organism | Homo sapiens |
| Sample Name | GSM4146394 |
| Center Name | GEO |
| Submission | SRA898897 |
| Month | 2 |
| Year | 2020 |
| Author | Philippe |
| Sample Source | RPF from sgLARP1+sgLARP1B HEK-293T cells treated with DMSO for 2h |
| Sample Title | larp1dko_dmso_RPF_rep2_reseq |
| Library-Type | Ribo-Seq |
| Replicate-Number | 2.0 |
| Condition | High |
| Inhibitor | Cycloheximide |
| Timepoint | NANA |
| Tissue | Kidney |
| Cell-Line | HEK293 |
| Cellular-Compartment | DMSO |
| Stage | 0.0 |
| Gene | 0.0 |
| Sex | 0.0 |
| Strain | 0.0 |
| Age | 0.0 |
| Infected | 0.0 |
| Disease | 0.0 |
| Genotype | sgLARP1+sgLARP1B |
| Feeding | 0.0 |
| Temperature | 0.0 |
| Sirna | 0.0 |
| Sgrna | 0.0 |
| Shrna | 0.0 |
| Plasmid | 0.0 |
| Growth-Condition | 0.0 |
| Stress | 0.0 |
| Cancer | 0.0 |
| Microrna | 0.0 |
| Individual | 0.0 |
| Antibody Used | 0.0 |
| Ethnicity | 0.0 |
| Dose | 0.0 |
| Stimulation | 0.0 |
| Host Organism | 0.0 |
| Unique Molecular Identifier (Umi) | 0.0 |
| Adapter Sequence | 0.0 |
| Mode Of Separation | 0.0 |
| Mode Of Rrna Depletion | 0.0 |
| Barcode Information | 0.0 |
| Nucelase Used | 0.0 |
| Kit Used | 0.0 |
| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SRR10382044 | Homo sapiens | RPF from sgLARP1+sgLARP1B HEK-293T cells treated with DMSO for 2h | HEK293 | Ribo-Seq | Cycloheximide |  |
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| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) |
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