SRR13679787 (PRJNA701262)

Processing Status: Not Yet Started

General Details

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Sample Name GSM5074343
Organism Xenopus laevis
Release Date 7/2021

Sample Links

Run Details

Spots 20011510
Total Bases 800460400
Total Bases 800460400

Repository Details

SRA SRR13679787
ENA SRR13679787
BioProject PRJNA701262

Experiment Details

Title frog_oocyte_eGFP_no_rRNA_depletion_matched_RiboZeroGold_RNA_seq

Sample Details

Run Accession SRR13679787
Total Number Of Spots (Original File)) 20011510
Total Number Of Bases (Original File) 800460400
Average Read Length 40
Original File Size (Mb) 314
Experiment Id SRX10069176
Library Strategy RNA-Seq
Library Selection cDNA
Library Source TRANSCRIPTOMIC
Library Layout SINGLE
Insert Size 0
Insert Deviation 0
Platform ILLUMINA
Model Illumina HiSeq 2500
Sra Project Accession (Srp) SRP305686
Pubmed Id 34213414
Sample SRS8230904
Biosample SAMN17860313
Sample Type simple
Organism Taxid 8355
Organism Xenopus laevis
Sample Name GSM5074343
Center Name GEO
Submission SRA1194491
Month 7
Year 2021
Author Xiang
Sample Source Xenopus laevis stage VI oocyte
Sample Title frog_oocyte_eGFP_no_rRNA_depletion_matched_RiboZeroGold_RNA_seq
Library-Type RNA-Seq
Sex female
Plasmid transfected with siRNAs targeting PABPC1 for 72h
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)
SRR13679787 Xenopus laevis Xenopus laevis stage VI oocyte RNA-Seq
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)

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