SRR13679794 (PRJNA701262)

Processing Status: Not Yet Started

General Details

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Sample Name GSM5074350
Organism Homo sapiens
Release Date 7/2021

Sample Links

Run Details

Spots 15248517
Total Bases 762425850
Total Bases 762425850

Repository Details

SRA SRR13679794
ENA SRR13679794
BioProject PRJNA701262

Experiment Details

Title HCT116_OsTIR1_PABPC1_AID_minus_IAA_RNA_seq

Sample Details

Run Accession SRR13679794
Total Number Of Spots (Original File)) 15248517
Total Number Of Bases (Original File) 762425850
Average Read Length 50
Original File Size (Mb) 290
Experiment Id SRX10069184
Library Strategy RNA-Seq
Library Selection cDNA
Library Source TRANSCRIPTOMIC
Library Layout SINGLE
Insert Size 0
Insert Deviation 0
Platform ILLUMINA
Model Illumina HiSeq 2500
Sra Project Accession (Srp) SRP305686
Pubmed Id 34213414
Sample SRS8230912
Biosample SAMN17860480
Sample Type simple
Organism Taxid 9606
Organism Homo sapiens
Sample Name GSM5074350
Center Name GEO
Submission SRA1194491
Month 7
Year 2021
Author Xiang
Sample Source HCT116 cells, OsTIR1 knock-in, AID-tagged PABPC1
Sample Title HCT116_OsTIR1_PABPC1_AID_minus_IAA_RNA_seq
Library-Type RNA-Seq
Tissue Colon
Cell-Line HCT116
Plasmid IAA for 1 h
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)
SRR13679794 Homo sapiens HCT116 cells, OsTIR1 knock-in, AID-tagged PABPC1 HCT116 RNA-Seq
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)

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