SRR13679805 (PRJNA701262)

Processing Status: Failed

General Details

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Sample Name GSM5074359
Organism Xenopus laevis
Release Date 7/2021

Sample Links

Run Details

Spots 13363854
Total Bases 534554160
Total Bases 534554160

Repository Details

SRA SRR13679805
ENA SRR13679805
BioProject PRJNA701262

Experiment Details

Title frog_oocyte_ePAB_no_rRNA_depeletion_ribo_seq

Sample Details

Run Accession SRR13679805
Total Number Of Spots (Original File)) 13363854
Total Number Of Bases (Original File) 534554160
Average Read Length 40
Original File Size (Mb) 208
Experiment Id SRX10069193
Library Strategy OTHER
Library Selection other
Library Source TRANSCRIPTOMIC
Library Layout SINGLE
Insert Size 0
Insert Deviation 0
Platform ILLUMINA
Model Illumina HiSeq 2500
Sra Project Accession (Srp) SRP305686
Pubmed Id 34213414
Sample SRS8230922
Biosample SAMN17860382
Sample Type simple
Organism Taxid 8355
Organism Xenopus laevis
Sample Name GSM5074359
Center Name GEO
Submission SRA1194491
Month 7
Year 2021
Author Xiang
Sample Source Xenopus laevis stage VI oocyte
Sample Title frog_oocyte_ePAB_no_rRNA_depeletion_ribo_seq
Library-Type Ribo-Seq
Sex female
Plasmid transfected with siRNAs targeting PABPC1 and PABPC4 for 72h
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)
SRR13679805 Xenopus laevis Xenopus laevis stage VI oocyte Ribo-Seq
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)

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