SRR1551171 (PRJNA258219)
Processing Status: Completed
General Details
| Sample Name | GSM1479604 |
|---|---|
| Organism | Mus musculus |
| Release Date | 7/2015 |
Sample Links
| GWIPS-viz | Trips-Viz | Custom Track |
|---|---|---|
| Visit GWIPS-viz |
Run Details
| Spots | 20565669 |
|---|---|
| Total Bases | 1645253520 |
| Total Bases | 1645253520 |
Repository Details
| SRA | SRR1551171 |
|---|---|
| ENA | SRR1551171 |
| BioProject | PRJNA258219 |
Experiment Details
| Title | miR-122 knockout mouse liver RPF |
|---|
Sample Details
| Run Accession | SRR1551171 |
|---|---|
| Total Number Of Spots (Original File)) | 20565669 |
| Total Number Of Bases (Original File) | 1645253520 |
| Average Read Length | 80 |
| Original File Size (Mb) | 892 |
| Experiment Id | SRX680710 |
| Library Strategy | RNA-Seq |
| Library Selection | cDNA |
| Library Source | TRANSCRIPTOMIC |
| Library Layout | SINGLE |
| Insert Size | 0 |
| Insert Deviation | 0 |
| Platform | ILLUMINA |
| Model | Illumina HiSeq 2000 |
| Sra Project Accession (Srp) | SRP045501 |
| Pubmed Id | 25263593 |
| Sample | SRS684389 |
| Biosample | SAMN02990406 |
| Sample Type | simple |
| Organism Taxid | 10090 |
| Organism | Mus musculus |
| Sample Name | GSM1479604 |
| Center Name | GEO |
| Submission | SRA179319 |
| Month | 7 |
| Year | 2015 |
| Author | Eichhorn |
| Sample Source | primary liver tissue |
| Sample Title | miR-122 knockout mouse liver RPF |
| Library-Type | Ribo-Seq |
| Condition | KO |
| Timepoint | 12 hNA |
| Tissue | Liver |
| Cell-Line | 3T3 |
| Growth-Condition | contact inhibited |
| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SRR1551171 | Mus musculus | primary liver tissue | 3T3 | Ribo-Seq |  |
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| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) |
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