SRR23363976 (PRJNA932446)
Processing Status: Completed
General Details
| Sample Name | GSM7031896 |
|---|---|
| Organism | Saccharomyces cerevisiae |
| Release Date | 9/2023 |
Sample Links
| GWIPS-viz | Trips-Viz | Custom Track |
|---|---|---|
Run Details
| Spots | 136238170 |
|---|---|
| Total Bases | 6811908500 |
| Total Bases | 6811908500 |
Repository Details
| SRA | SRR23363976 |
|---|---|
| ENA | SRR23363976 |
| BioProject | PRJNA932446 |
Experiment Details
| Title | Ribo_ pat1D _Replicate_1 |
|---|
Sample Details
| Run Accession | SRR23363976 |
|---|---|
| Total Number Of Spots (Original File)) | 136238170 |
| Total Number Of Bases (Original File) | 6811908500 |
| Average Read Length | 50 |
| Original File Size (Mb) | 2815 |
| Experiment Id | SRX19304990 |
| Library Name | GSM7031896 |
| Library Strategy | OTHER |
| Library Selection | other |
| Library Source | TRANSCRIPTOMIC |
| Library Layout | SINGLE |
| Insert Size | 0 |
| Insert Deviation | 0 |
| Platform | ILLUMINA |
| Model | Illumina HiSeq 2500 |
| Sra Project Accession (Srp) | SRP421393 |
| Pubmed Id | 37439347 |
| Sample | SRS16704642 |
| Biosample | SAMN33193320 |
| Sample Type | simple |
| Organism Taxid | 4932 |
| Organism | Saccharomyces cerevisiae |
| Sample Name | GSM7031896 |
| Center Name | Section on Nutrient Control of Gene Expression, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health |
| Submission | SRA1721819 |
| Month | 9 |
| Year | 2023 |
| Author | Vijjamarri |
| Sample Source | Whole cells |
| Sample Title | Ribo_ pat1D _Replicate_1 |
| Library-Type | Ribo-Seq |
| Replicate-Number | 0.0 |
| Condition | Test |
| Inhibitor | 0.0 |
| Timepoint | NANA |
| Tissue | 0.0 |
| Cell-Line | NA_yeast cells |
| Cellular-Compartment | Ribosome protected RNA 25-34 nt |
| Stage | 0.0 |
| Gene | 0.0 |
| Sex | 0.0 |
| Strain | 0.0 |
| Age | 0.0 |
| Infected | 0.0 |
| Disease | 0.0 |
| Genotype | W303 F2181 (MATa ura3-1 trp1-1 ade2-1 leu2-3,112 his3-11,15 {delta}pat1::HIS3) |
| Feeding | 0.0 |
| Temperature | 0.0 |
| Sirna | 0.0 |
| Sgrna | 0.0 |
| Shrna | 0.0 |
| Plasmid | 0.0 |
| Growth-Condition | 0.0 |
| Stress | 0.0 |
| Cancer | 0.0 |
| Microrna | 0.0 |
| Individual | 0.0 |
| Antibody Used | 0.0 |
| Ethnicity | 0.0 |
| Dose | 0.0 |
| Stimulation | 0.0 |
| Host Organism | 0.0 |
| Unique Molecular Identifier (Umi) | 0.0 |
| Adapter Sequence | 0.0 |
| Mode Of Separation | 0.0 |
| Mode Of Rrna Depletion | 0.0 |
| Barcode Information | 0.0 |
| Nucelase Used | 0.0 |
| Kit Used | 0.0 |
| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SRR23363976 | Saccharomyces cerevisiae | Whole cells | NA_yeast cells | Ribo-Seq | 0.0 |  |
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| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) |
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