SRR403885 (PRJNA152347)

Processing Status: Completed

General Details

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Sample Name GSM869039
Organism Homo sapiens
Release Date 2/2012

Sample Links

Run Details

Spots 19742795
Total Bases 789711800
Total Bases 789711800

Repository Details

SRA SRR403885
ENA SRR403885
BioProject PRJNA152347

Experiment Details

Title Footprint for rapamycin treated PC3 cells, replicate #1.

Sample Details

Run Accession SRR403885
Total Number Of Spots (Original File)) 19742795
Total Number Of Bases (Original File) 789711800
Average Read Length 40
Original File Size (Mb) 472
Experiment Id SRX118288
Library Name GSM869039: Footprint for rapamcyin treated PC3 cells, replicate #1.
Library Strategy RNA-Seq
Library Selection cDNA
Library Source TRANSCRIPTOMIC
Library Layout SINGLE
Insert Size 0
Insert Deviation 0
Platform ILLUMINA
Model Illumina Genome Analyzer II
Sra Project Accession (Srp) SRP010679
Pubmed Id 22367541
Sample SRS290857
Biosample SAMN00779920
Sample Type simple
Organism Taxid 9606
Organism Homo sapiens
Sample Name GSM869039
Center Name GEO
Submission SRA049772
Month 2
Year 2012
Author Hsieh
Sample Source PC3 human prostate cancer cells
Sample Title Footprint for rapamycin treated PC3 cells, replicate #1.
Library-Type Ribo-Seq
Condition Test
Inhibitor rapamycin
Tissue Prostate
Cell-Line PC3
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)
SRR403885 Homo sapiens PC3 human prostate cancer cells PC3 Ribo-Seq rapamycin
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)

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