Hsieh et al. 2012 (PRJNA152347)

General Details

Title The translational landscape of mTOR signaling steers cancer initiation and metastasis
Organism
Number of Samples 6
Release Date 2012/02/28 00:00
Sequencing Types
Protocol Details

Study Links

Repository Details

SRA SRP010679
ENA SRP010679
GEO
BioProject PRJNA152347

Publication

Title
Authors Hsieh AC,Liu Y,Edlind MP,Ingolia NT,Janes MR,Sher A,Shi EY,Stumpf CR,Christensen C,Bonham MJ,Wang S,Ren P,Martin M,Jessen K,Feldman ME,Weissman JS,Shokat KM,Rommel C,Ruggero D
Journal Nature
Publication Date 2012 Feb 22
Abstract The mammalian target of rapamycin (mTOR) kinase is a master regulator of protein synthesis that couples nutrient sensing to cell growth and cancer. However, the downstream translationally regulated nodes of gene expression that may direct cancer development are poorly characterized. Using ribosome profiling, we uncover specialized translation of the prostate cancer genome by oncogenic mTOR signalling, revealing a remarkably specific repertoire of genes involved in cell proliferation, metabolism and invasion. We extend these findings by functionally characterizing a class of translationally controlled pro-invasion messenger RNAs that we show direct prostate cancer invasion and metastasis downstream of oncogenic mTOR signalling. Furthermore, we develop a clinically relevant ATP site inhibitor of mTOR, INK128, which reprograms this gene expression signature with therapeutic benefit for prostate cancer metastasis, for which there is presently no cure. Together, these findings extend our understanding of how the 'cancerous' translation machinery steers specific cancer cell behaviours, including metastasis, and may be therapeutically targeted.
PMC PMC3663483
PMID 22367541
DOI
Run Accession Study Accession Scientific Name Cell Line Library Type Treatment GWIPS-viz Trips-Viz Reads BAM BigWig (F) BigWig (R)
SRR403883 PRJNA152347 Homo sapiens PC3 Ribo-Seq
SRR403885 PRJNA152347 Homo sapiens PC3 Ribo-Seq rapamycin
SRR403887 PRJNA152347 Homo sapiens PC3 Ribo-Seq
SRR403889 PRJNA152347 Homo sapiens PC3 Ribo-Seq
SRR403891 PRJNA152347 Homo sapiens PC3 Ribo-Seq rapamycin
SRR403893 PRJNA152347 Homo sapiens PC3 Ribo-Seq
Run Accession Study Accession Scientific Name Cell Line Library Type Treatment GWIPS-viz Trips-Viz Reads BAM BigWig (F) BigWig (R)

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