0.0 et al. 2020 (PRJEB36893)

General Details

Title Trimmed read fastq files and mapped read bam files of four streptomyces species. Raw read fastq files could be found in GEO or ENA database as follows: - S. avermitilis RNA, Ribo : GSE118597 - S. clavuligerus RNA, Ribo : GSE128216 - S. venezuelae RNA : PRJEB34219 - S. venezuelae Ribo : GSE138278 - S. tsukubaensis RNA, Ribo : GSE97637
Organism
Number of Samples 60
Release Date 2020/03/23 00:00
Sequencing Types
Protocol Details

Study Links

Repository Details

SRA ERP120150
ENA ERP120150
GEO 0.0
BioProject PRJEB36893

Publication

Title
Authors Vogel P, Beyer D, Holm C, Palberg T
Journal Soft matter
Publication Date 2024 Nov 15
Abstract
PMC
PMID None Available
DOI
Run Accession Study Accession Scientific Name Cell Line Library Type Treatment GWIPS-viz Trips-Viz Reads BAM BigWig (F) BigWig (R)
ERR3949729 PRJEB36893 Streptomyces avermitilis 0.0 Ribo-Seq 0.0
ERR3949730 PRJEB36893 Streptomyces avermitilis 0.0 Ribo-Seq 0.0
ERR3949731 PRJEB36893 Streptomyces avermitilis 0.0 Ribo-Seq 0.0
ERR3949732 PRJEB36893 Streptomyces avermitilis 0.0 Ribo-Seq 0.0
ERR3949734 PRJEB36893 Streptomyces avermitilis 0.0 Ribo-Seq 0.0
ERR3949735 PRJEB36893 Streptomyces avermitilis 0.0 Ribo-Seq 0.0
ERR3949745 PRJEB36893 Streptomyces clavuligerus 0.0 Ribo-Seq 0.0
ERR3949746 PRJEB36893 Streptomyces clavuligerus 0.0 Ribo-Seq 0.0
ERR3949747 PRJEB36893 Streptomyces clavuligerus 0.0 Ribo-Seq 0.0
ERR3949748 PRJEB36893 Streptomyces clavuligerus 0.0 Ribo-Seq 0.0
ERR3949749 PRJEB36893 Streptomyces clavuligerus 0.0 Ribo-Seq 0.0
ERR3949750 PRJEB36893 Streptomyces clavuligerus 0.0 Ribo-Seq 0.0
ERR3949751 PRJEB36893 Streptomyces clavuligerus 0.0 Ribo-Seq 0.0
ERR3949752 PRJEB36893 Streptomyces clavuligerus 0.0 Ribo-Seq 0.0
ERR3949753 PRJEB36893 Streptomyces avermitilis 0.0 Ribo-Seq 0.0
ERR3949754 PRJEB36893 Streptomyces avermitilis 0.0 Ribo-Seq 0.0
ERR3949755 PRJEB36893 Streptomyces avermitilis 0.0 Ribo-Seq 0.0
ERR3949756 PRJEB36893 Streptomyces avermitilis 0.0 Ribo-Seq 0.0
ERR3949759 PRJEB36893 Streptomyces avermitilis 0.0 Ribo-Seq 0.0
ERR3949760 PRJEB36893 Streptomyces avermitilis 0.0 Ribo-Seq 0.0
ERR3949769 PRJEB36893 Streptomyces tsukubensis 0.0 Ribo-Seq 0.0
ERR3949770 PRJEB36893 Streptomyces tsukubensis 0.0 Ribo-Seq 0.0
ERR3949771 PRJEB36893 Streptomyces tsukubensis 0.0 Ribo-Seq 0.0
ERR3949772 PRJEB36893 Streptomyces tsukubensis 0.0 Ribo-Seq 0.0
ERR3949773 PRJEB36893 Streptomyces tsukubensis 0.0 Ribo-Seq 0.0
ERR3949774 PRJEB36893 Streptomyces tsukubensis 0.0 Ribo-Seq 0.0
ERR3949775 PRJEB36893 Streptomyces tsukubensis 0.0 Ribo-Seq 0.0
ERR3949776 PRJEB36893 Streptomyces tsukubensis 0.0 Ribo-Seq 0.0
ERR3949804 PRJEB36893 Streptomyces avermitilis 0.0 Ribo-Seq 0.0
ERR3949805 PRJEB36893 Streptomyces avermitilis 0.0 Ribo-Seq 0.0
ERR3949806 PRJEB36893 Streptomyces avermitilis 0.0 Ribo-Seq 0.0
ERR3949807 PRJEB36893 Streptomyces avermitilis 0.0 Ribo-Seq 0.0
ERR3949808 PRJEB36893 Streptomyces avermitilis 0.0 Ribo-Seq 0.0
ERR3949809 PRJEB36893 Streptomyces avermitilis 0.0 Ribo-Seq 0.0
ERR3949810 PRJEB36893 Streptomyces avermitilis 0.0 Ribo-Seq 0.0
ERR3949811 PRJEB36893 Streptomyces avermitilis 0.0 Ribo-Seq 0.0
ERR3949820 PRJEB36893 Streptomyces clavuligerus 0.0 Ribo-Seq 0.0
ERR3949821 PRJEB36893 Streptomyces clavuligerus 0.0 Ribo-Seq 0.0
ERR3949822 PRJEB36893 Streptomyces clavuligerus 0.0 Ribo-Seq 0.0
ERR3949823 PRJEB36893 Streptomyces clavuligerus 0.0 Ribo-Seq 0.0
ERR3949824 PRJEB36893 Streptomyces clavuligerus 0.0 Ribo-Seq 0.0
ERR3949825 PRJEB36893 Streptomyces clavuligerus 0.0 Ribo-Seq 0.0
ERR3949826 PRJEB36893 Streptomyces clavuligerus 0.0 Ribo-Seq 0.0
ERR3949827 PRJEB36893 Streptomyces clavuligerus 0.0 Ribo-Seq 0.0
ERR3949828 PRJEB36893 Streptomyces venezuelae 0.0 Ribo-Seq 0.0
ERR3949829 PRJEB36893 Streptomyces venezuelae 0.0 Ribo-Seq 0.0
ERR3949830 PRJEB36893 Streptomyces venezuelae 0.0 Ribo-Seq 0.0
ERR3949831 PRJEB36893 Streptomyces venezuelae 0.0 Ribo-Seq 0.0
ERR3949832 PRJEB36893 Streptomyces venezuelae 0.0 Ribo-Seq 0.0
ERR3949833 PRJEB36893 Streptomyces venezuelae 0.0 Ribo-Seq 0.0
ERR3949834 PRJEB36893 Streptomyces venezuelae 0.0 Ribo-Seq 0.0
ERR3949835 PRJEB36893 Streptomyces venezuelae 0.0 Ribo-Seq 0.0
ERR3949844 PRJEB36893 Streptomyces tsukubensis 0.0 Ribo-Seq 0.0
ERR3949845 PRJEB36893 Streptomyces tsukubensis 0.0 Ribo-Seq 0.0
ERR3949846 PRJEB36893 Streptomyces tsukubensis 0.0 Ribo-Seq 0.0
ERR3949847 PRJEB36893 Streptomyces tsukubensis 0.0 Ribo-Seq 0.0
ERR3949848 PRJEB36893 Streptomyces tsukubensis 0.0 Ribo-Seq 0.0
ERR3949849 PRJEB36893 Streptomyces tsukubensis 0.0 Ribo-Seq 0.0
ERR3949850 PRJEB36893 Streptomyces tsukubensis 0.0 Ribo-Seq 0.0
ERR3949851 PRJEB36893 Streptomyces tsukubensis 0.0 Ribo-Seq 0.0
Run Accession Study Accession Scientific Name Cell Line Library Type Treatment GWIPS-viz Trips-Viz Reads BAM BigWig (F) BigWig (R)

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