Unknown Author 2014 (PRJEB7207)
General Details
| Title | We monitored translation at nucleotide resolution in a genome-wide high throughput manner, using ribosome profiling on the murine C2C12 cell line, a model for skeletal muscle differentiation. We simplified the existing protocol and developed a data analysis pipeline to characterize translation initiation during differentiation of myoblasts into myotubes, to detect switches in the use of alternative translation initiation sites, as well as to quantify translation. |
|---|---|
| Organism | |
| Number of Samples | 22 |
| Release Date | 2014/11/01 00:00 |
| Sequencing Types | |
| Protocol Details |
Study Links
| GWIPS-viz | Trips-Viz |
|---|---|
| Visit GWIPS-viz |
Repository Details
| SRA | ERP006908 |
|---|---|
| ENA | ERP006908 |
| GEO | |
| BioProject | PRJEB7207 |
Publication
| Run Accession | Study Accession | Scientific Name | Cell Line | Library Type | Treatment | GWIPS-viz | Trips-Viz | Reads | BAM | BigWig (F) | BigWig (R) | ||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ERR595895 | PRJEB7207 | Mus musculus | C2C12 |  |
 |
 |
 |
|
|
||||
| ERR595896 | PRJEB7207 | Mus musculus | C2C12 | |
|
|
|
|
|
||||
| ERR595897 | PRJEB7207 | Mus musculus | C2C12 | |
|
|
|
|
|
||||
| ERR595898 | PRJEB7207 | Mus musculus | C2C12 | |
|
|
|
|
|
||||
| ERR595900 | PRJEB7207 | Mus musculus | C2C12 | Harringtonine | |
|
|
|
|
|
|||
| ERR595904 | PRJEB7207 | Mus musculus | C2C12 | Cycloheximide | |
|
|
|
|
|
|||
| ERR595908 | PRJEB7207 | Mus musculus | C2C12 | Cycloheximide | |
|
|
|
|
|
|||
| ERR595899 | PRJEB7207 | Mus musculus | C2C12 | Harringtonine | |
|
|
|
|
|
|||
| ERR595901 | PRJEB7207 | Mus musculus | C2C12 | Harringtonine | |
|
|
|
|
|
|||
| ERR595902 | PRJEB7207 | Mus musculus | C2C12 | Cycloheximide | |
|
|
|
|
|
|||
| ERR595903 | PRJEB7207 | Mus musculus | C2C12 | Cycloheximide | |
|
|
|
|
|
|||
| ERR595905 | PRJEB7207 | Mus musculus | C2C12 | Harringtonine | |
|
|
|
|
|
|||
| ERR595909 | PRJEB7207 | Mus musculus | C2C12 | Cycloheximide | |
|
|
|
|
|
|||
| ERR595910 | PRJEB7207 | Mus musculus | C2C12 | Cycloheximide | |
|
|
|
|
|
|||
| ERR595906 | PRJEB7207 | Mus musculus | C2C12 | Harringtonine | |
|
|
|
|
|
|||
| ERR595907 | PRJEB7207 | Mus musculus | C2C12 | Harringtonine | |
|
|
|
|
|
|||
| ERR832560 | PRJEB7207 | Mus musculus | |
|
|
|
|
|
|||||
| ERR832561 | PRJEB7207 | Mus musculus | |
|
|
|
|
|
|||||
| ERR832562 | PRJEB7207 | Mus musculus | |
|
|
|
|
|
|||||
| ERR832563 | PRJEB7207 | Mus musculus | |
|
|
|
|
|
|||||
| ERR832564 | PRJEB7207 | Mus musculus | |
|
|
|
|
|
|||||
| ERR832565 | PRJEB7207 | Mus musculus | |
|
|
|
|
|
|||||
| Run Accession | Study Accession | Scientific Name | Cell Line | Library Type | Treatment | GWIPS-viz | Trips-Viz | Reads | BAM | BigWig (F) | BigWig (R) |
ⓘ For more Information on the columns shown here see: About