0.0 et al. 2014 (PRJEB7207)
General Details
| Title | We monitored translation at nucleotide resolution in a genome-wide high throughput manner, using ribosome profiling on the murine C2C12 cell line, a model for skeletal muscle differentiation. We simplified the existing protocol and developed a data analysis pipeline to characterize translation initiation during differentiation of myoblasts into myotubes, to detect switches in the use of alternative translation initiation sites, as well as to quantify translation. |
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| Organism | |
| Number of Samples | 18 |
| Release Date | 2014/11/01 00:00 |
| Sequencing Types | |
| Protocol Details |
Study Links
| GWIPS-viz | Trips-Viz |
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Repository Details
| SRA | ERP006908 |
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| ENA | ERP006908 |
| GEO | 0.0 |
| BioProject | PRJEB7207 |
Publication
| Run Accession | Study Accession | Scientific Name | Cell Line | Library Type | Treatment | GWIPS-viz | Trips-Viz | Reads | BAM | BigWig (F) | BigWig (R) | ||
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| ERR595900 | PRJEB7207 | Mus musculus | C2C12 | 0.0 | Harringtonine |  |
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| ERR595904 | PRJEB7207 | Mus musculus | C2C12 | 0.0 | Cycloheximide | |
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| ERR595908 | PRJEB7207 | Mus musculus | C2C12 | 0.0 | Cycloheximide | |
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| ERR595899 | PRJEB7207 | Mus musculus | C2C12 | 0.0 | Harringtonine | |
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| ERR595901 | PRJEB7207 | Mus musculus | C2C12 | 0.0 | Harringtonine | |
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| ERR595902 | PRJEB7207 | Mus musculus | C2C12 | 0.0 | Cycloheximide | |
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| ERR595903 | PRJEB7207 | Mus musculus | C2C12 | 0.0 | Cycloheximide | |
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| ERR595905 | PRJEB7207 | Mus musculus | C2C12 | 0.0 | Harringtonine | |
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| ERR595909 | PRJEB7207 | Mus musculus | C2C12 | 0.0 | Cycloheximide | |
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| ERR595910 | PRJEB7207 | Mus musculus | C2C12 | 0.0 | Cycloheximide | |
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| ERR595906 | PRJEB7207 | Mus musculus | C2C12 | 0.0 | Harringtonine | |
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| ERR595907 | PRJEB7207 | Mus musculus | C2C12 | 0.0 | Harringtonine | |
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| ERR832560 | PRJEB7207 | Mus musculus | 0.0 | 0.0 | 0.0 | |
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| ERR832561 | PRJEB7207 | Mus musculus | 0.0 | 0.0 | 0.0 | |
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| ERR832562 | PRJEB7207 | Mus musculus | 0.0 | 0.0 | 0.0 | |
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| ERR832563 | PRJEB7207 | Mus musculus | 0.0 | 0.0 | 0.0 | |
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| ERR832564 | PRJEB7207 | Mus musculus | 0.0 | 0.0 | 0.0 | |
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| ERR832565 | PRJEB7207 | Mus musculus | 0.0 | 0.0 | 0.0 | |
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| Run Accession | Study Accession | Scientific Name | Cell Line | Library Type | Treatment | GWIPS-viz | Trips-Viz | Reads | BAM | BigWig (F) | BigWig (R) |
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