Tiburcio et al. 2024 (PRJNA1126209)

General Details

Title Proteasome inhibition sensitizes anaplastic Wilms tumor to actinomycin D
Organism
Number of Samples 18
Release Date 2024/06/20 00:00
Sequencing Types
Protocol Details

Study Links

Repository Details

SRA SRP515023
ENA SRP515023
GEO 0.0
BioProject PRJNA1126209

Publication

Title
Authors Tiburcio PDB, Chen K, Xu L, Chen KS
Journal bioRxiv : the preprint server for biology
Publication Date 2024 Jun 20
Abstract Wilms tumor is the most common kidney cancer in children, and diffusely anaplastic Wilms tumor is the most chemoresistant histological subtype. Here we explore how Wilms tumor cells evade the common chemotherapeutic drug actinomycin D, which inhibits ribosomal RNA biogenesis. Using ribosome profiling, protein arrays, and a genome-wide knockout screen, we describe how actinomycin D disrupts protein homeostasis and blocks cell cycle progression. We found that, when ribosomal capacity is limited by actinomycin D treatment, anaplastic Wilms tumor cells preferentially translate proteasome components and upregulate proteasome activity. Furthermore, the proteasome inhibitor bortezomib sensitizes cells to actinomycin D treatment by inducing apoptosis both in vitro and in vivo . Lastly, we show that increased levels of proteasome components are associated with anaplastic histology and with worse prognosis in non-anaplastic Wilms tumor. In sum, maintaining protein homeostasis is critical for Wilms tumor proliferation, and it can be therapeutically disrupted by blocking protein synthesis or turnover.
PMC PMC11212905
PMID 38948702
DOI
Run Accession Study Accession Scientific Name Cell Line Library Type Treatment GWIPS-viz Trips-Viz Reads BAM BigWig (F) BigWig (R)
SRR29477277 PRJNA1126209 Homo sapiens WiT49NA_Wilms tumor Ribo-Seq 0.0
SRR29477276 PRJNA1126209 Homo sapiens WiT49NA_Wilms tumor Ribo-Seq 0.0
SRR29477275 PRJNA1126209 Homo sapiens WiT49NA_Wilms tumor Ribo-Seq 0.0
SRR29477274 PRJNA1126209 Homo sapiens WiT49NA_Wilms tumor Ribo-Seq 0.0
SRR29477273 PRJNA1126209 Homo sapiens WiT49NA_Wilms tumor Ribo-Seq 0.0
SRR29477272 PRJNA1126209 Homo sapiens WiT49NA_Wilms tumor Ribo-Seq 0.0
SRR29477271 PRJNA1126209 Homo sapiens WiT49NA_Wilms tumor Ribo-Seq 0.0
SRR29477270 PRJNA1126209 Homo sapiens WiT49NA_Wilms tumor Ribo-Seq 0.0
SRR29477269 PRJNA1126209 Homo sapiens WiT49NA_Wilms tumor Ribo-Seq 0.0
SRR29477268 PRJNA1126209 Homo sapiens WiT49NA_Wilms tumor Ribo-Seq 0.0
SRR29477267 PRJNA1126209 Homo sapiens WiT49NA_Wilms tumor Ribo-Seq 0.0
SRR29477266 PRJNA1126209 Homo sapiens WiT49NA_Wilms tumor Ribo-Seq 0.0
SRR29477265 PRJNA1126209 Homo sapiens WiT49NA_Wilms tumor Ribo-Seq 0.0
SRR29477264 PRJNA1126209 Homo sapiens WiT49NA_Wilms tumor Ribo-Seq 0.0
SRR29477263 PRJNA1126209 Homo sapiens WiT49NA_Wilms tumor Ribo-Seq 0.0
SRR29477262 PRJNA1126209 Homo sapiens WiT49NA_Wilms tumor Ribo-Seq 0.0
SRR29477261 PRJNA1126209 Homo sapiens WiT49NA_Wilms tumor Ribo-Seq 0.0
SRR29477260 PRJNA1126209 Homo sapiens WiT49NA_Wilms tumor Ribo-Seq 0.0
Run Accession Study Accession Scientific Name Cell Line Library Type Treatment GWIPS-viz Trips-Viz Reads BAM BigWig (F) BigWig (R)

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