Liu et al. 2013 (PRJNA205933)
General Details
| Title | High resolution view of bacteriophage lambda gene expression by ribosome profiling |
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| Organism | |
| Number of Samples | 20 |
| Release Date | 2013/05/30 00:00 |
| Sequencing Types | |
| Protocol Details |
Study Links
| GWIPS-viz | Trips-Viz |
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| Visit Trips-Viz |
Repository Details
| SRA | SRP023499 |
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| ENA | SRP023499 |
| GEO | GSE47509 |
| BioProject | PRJNA205933 |
Publication
| Title | |
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| Authors | Liu X,Jiang H,Gu Z,Roberts JW |
| Journal | Proceedings of the National Academy of Sciences of the United States of America |
| Publication Date | 2013 Jul 16 |
| Abstract | Bacteriophage lambda is one of the most extensively studied organisms and has been a primary model for understanding basic modes of genetic regulation. Here, we examine the progress of lambda gene expression during phage development by ribosome profiling and, thereby, provide a very-high-resolution view of lambda gene expression. The known genes are expressed in a predictable fashion, authenticating the analysis. However, many previously unappreciated potential open reading frames become apparent in the expression analysis, revealing an unexpected complexity in the pattern of lambda gene function. |
| PMC | PMC3718152 |
| PMID | 23812753 |
| DOI |
| Run Accession | Study Accession | Scientific Name | Cell Line | Library Type | Treatment | GWIPS-viz | Trips-Viz | Reads | BAM | BigWig (F) | BigWig (R) | ||
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| SRR869824 | PRJNA205933 | Escherichia coli |  |
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| SRR869816 | PRJNA205933 | Escherichia coli | |
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| SRR869817 | PRJNA205933 | Escherichia coli | |
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| SRR869818 | PRJNA205933 | Escherichia coli | |
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| SRR869819 | PRJNA205933 | Escherichia coli | |
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| SRR869820 | PRJNA205933 | Escherichia coli | |
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| SRR869821 | PRJNA205933 | Escherichia coli | |
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| SRR869822 | PRJNA205933 | Escherichia coli | |
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| SRR869823 | PRJNA205933 | Escherichia coli | |
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| SRR869825 | PRJNA205933 | Escherichia coli | |
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| SRR869826 | PRJNA205933 | Escherichia coli | |
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| SRR869827 | PRJNA205933 | Escherichia coli | |
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| SRR869828 | PRJNA205933 | Escherichia coli | |
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| SRR869829 | PRJNA205933 | Escherichia coli | |
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| SRR869830 | PRJNA205933 | Escherichia coli | |
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| SRR869831 | PRJNA205933 | Escherichia coli | |
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| SRR869832 | PRJNA205933 | Escherichia coli | |
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| SRR869833 | PRJNA205933 | Escherichia coli | |
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| SRR869834 | PRJNA205933 | Escherichia coli | |
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| SRR869835 | PRJNA205933 | Escherichia coli | |
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| Run Accession | Study Accession | Scientific Name | Cell Line | Library Type | Treatment | GWIPS-viz | Trips-Viz | Reads | BAM | BigWig (F) | BigWig (R) |
ⓘ For more Information on the columns shown here see: About