Katz et al. 2015 (PRJNA252579)
General Details
Title | Musashi proteins are post-transcriptional regulators of the epithelial-luminal cell state |
---|---|
Organism | |
Number of Samples | 8 |
Release Date | 2014/06/12 00:00 |
Sequencing Types | |
Protocol Details |
Study Links
GWIPS-viz | Trips-Viz |
---|---|
Repository Details
SRA | SRP043153 |
---|---|
ENA | SRP043153 |
GEO | GSE58423 |
BioProject | PRJNA252579 |
Publication
Title | |
---|---|
Authors | Katz Y,Li F,Lambert NJ,Sokol ES,Tam WL,Cheng AW,Airoldi EM,Lengner CJ,Gupta PB,Yu Z,Jaenisch R,Burge CB |
Journal | eLife |
Publication Date | 2014 Nov 7 |
Abstract | The conserved Musashi (Msi) family of RNA binding proteins are expressed in stem/progenitor and cancer cells, but generally absent from differentiated cells, consistent with a role in cell state regulation. We found that Msi genes are rarely mutated but frequently overexpressed in human cancers and are associated with an epithelial-luminal cell state. Using ribosome profiling and RNA-seq analysis, we found that Msi proteins regulate translation of genes implicated in epithelial cell biology and epithelial-to-mesenchymal transition (EMT), and promote an epithelial splicing pattern. Overexpression of Msi proteins inhibited the translation of Jagged1, a factor required for EMT, and repressed EMT in cell culture and in mammary gland in vivo. Knockdown of Msis in epithelial cancer cells promoted loss of epithelial identity. Our results show that mammalian Msi proteins contribute to an epithelial gene expression program in neural and mammary cell types. |
PMC | PMC4381951 |
PMID | 25380226 |
DOI |
Run Accession | Study Accession | Scientific Name | Cell Line | Library Type | Treatment | GWIPS-viz | Trips-Viz | Reads | BAM | BigWig (F) | BigWig (R) | ||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SRR1382092 | PRJNA252579 | Mus musculus | KH2 | Ribo-Seq | |||||||||
SRR1382093 | PRJNA252579 | Mus musculus | KH2 | Ribo-Seq | |||||||||
SRR1382094 | PRJNA252579 | Mus musculus | Ribo-Seq | ||||||||||
SRR1382095 | PRJNA252579 | Mus musculus | Ribo-Seq | ||||||||||
SRR1382096 | PRJNA252579 | Mus musculus | Ribo-Seq | ||||||||||
SRR1382097 | PRJNA252579 | Mus musculus | Ribo-Seq | ||||||||||
SRR1382098 | PRJNA252579 | Mus musculus | Ribo-Seq | ||||||||||
SRR1382099 | PRJNA252579 | Mus musculus | Ribo-Seq | ||||||||||
Run Accession | Study Accession | Scientific Name | Cell Line | Library Type | Treatment | GWIPS-viz | Trips-Viz | Reads | BAM | BigWig (F) | BigWig (R) |
ⓘ For more Information on the columns shown here see: About