Katz et al. 2015 (PRJNA252579)

General Details

Title Musashi proteins are post-transcriptional regulators of the epithelial-luminal cell state
Organism
Number of Samples 8
Release Date 2014/06/12 00:00
Sequencing Types
Protocol Details

Study Links

Repository Details

SRA SRP043153
ENA SRP043153
GEO
BioProject PRJNA252579

Publication

Title
Authors Katz Y,Li F,Lambert NJ,Sokol ES,Tam WL,Cheng AW,Airoldi EM,Lengner CJ,Gupta PB,Yu Z,Jaenisch R,Burge CB
Journal eLife
Publication Date 2014 Nov 7
Abstract The conserved Musashi (Msi) family of RNA binding proteins are expressed in stem/progenitor and cancer cells, but generally absent from differentiated cells, consistent with a role in cell state regulation. We found that Msi genes are rarely mutated but frequently overexpressed in human cancers and are associated with an epithelial-luminal cell state. Using ribosome profiling and RNA-seq analysis, we found that Msi proteins regulate translation of genes implicated in epithelial cell biology and epithelial-to-mesenchymal transition (EMT), and promote an epithelial splicing pattern. Overexpression of Msi proteins inhibited the translation of Jagged1, a factor required for EMT, and repressed EMT in cell culture and in mammary gland in vivo. Knockdown of Msis in epithelial cancer cells promoted loss of epithelial identity. Our results show that mammalian Msi proteins contribute to an epithelial gene expression program in neural and mammary cell types.
PMC PMC4381951
PMID 25380226
DOI
Run Accession Study Accession Scientific Name Cell Line Library Type Treatment GWIPS-viz Trips-Viz Reads BAM BigWig (F) BigWig (R)
SRR1382092 PRJNA252579 Mus musculus KH2 Ribo-Seq
SRR1382093 PRJNA252579 Mus musculus KH2 Ribo-Seq
SRR1382094 PRJNA252579 Mus musculus Ribo-Seq
SRR1382095 PRJNA252579 Mus musculus Ribo-Seq
SRR1382096 PRJNA252579 Mus musculus Ribo-Seq
SRR1382097 PRJNA252579 Mus musculus Ribo-Seq
SRR1382098 PRJNA252579 Mus musculus Ribo-Seq
SRR1382099 PRJNA252579 Mus musculus Ribo-Seq
Run Accession Study Accession Scientific Name Cell Line Library Type Treatment GWIPS-viz Trips-Viz Reads BAM BigWig (F) BigWig (R)

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