Sidrauski et al. 2015 (PRJNA274997)

General Details

Title The Small Molecule ISRIB Reverses the Effects of eIF2α Phosphorylation on Translation and Stress Granule Assembly
Organism
Number of Samples 16
Release Date 2015/02/09 00:00
Sequencing Types
Protocol Details

Study Links

Repository Details

SRA SRP053402
ENA SRP053402
GEO
BioProject PRJNA274997

Publication

Title
Authors Sidrauski C,McGeachy AM,Ingolia NT,Walter P
Journal eLife
Publication Date 2015 Feb 26
Abstract Previously, we identified ISRIB as a potent inhibitor of the integrated stress response (ISR) and showed that ISRIB makes cells resistant to the effects of eIF2α phosphorylation and enhances long-term memory in rodents (Sidrauski et al., 2013). Here, we show by genome-wide in vivo ribosome profiling that translation of a restricted subset of mRNAs is induced upon ISR activation. ISRIB substantially reversed the translational effects elicited by phosphorylation of eIF2α and induced no major changes in translation or mRNA levels in unstressed cells. eIF2α phosphorylation-induced stress granule (SG) formation was blocked by ISRIB. Strikingly, ISRIB addition to stressed cells with pre-formed SGs induced their rapid disassembly, liberating mRNAs into the actively translating pool. Restoration of mRNA translation and modulation of SG dynamics may be an effective treatment of neurodegenerative diseases characterized by eIF2α phosphorylation, SG formation, and cognitive loss.
PMC PMC4341466
PMID 25719440
DOI
Run Accession Study Accession Scientific Name Cell Line Library Type Treatment GWIPS-viz Trips-Viz Reads BAM BigWig (F) BigWig (R)
SRR1795425 PRJNA274997 Homo sapiens HEK293 Ribo-Seq untreated
SRR1795426 PRJNA274997 Homo sapiens HEK293 Ribo-Seq untreated
SRR1795427 PRJNA274997 Homo sapiens HEK293 Ribo-Seq
SRR1795428 PRJNA274997 Homo sapiens HEK293 Ribo-Seq
SRR1795429 PRJNA274997 Homo sapiens HEK293 Ribo-Seq tunicamycin
SRR1795430 PRJNA274997 Homo sapiens HEK293 Ribo-Seq tunicamycin
SRR1795431 PRJNA274997 Homo sapiens HEK293 Ribo-Seq tunicamycin
SRR1795432 PRJNA274997 Homo sapiens HEK293 Ribo-Seq tunicamycin
SRR1795433 PRJNA274997 Homo sapiens HEK293 Ribo-Seq untreated
SRR1795434 PRJNA274997 Homo sapiens HEK293 Ribo-Seq untreated
SRR1795435 PRJNA274997 Homo sapiens HEK293 Ribo-Seq
SRR1795436 PRJNA274997 Homo sapiens HEK293 Ribo-Seq
SRR1795437 PRJNA274997 Homo sapiens HEK293 Ribo-Seq tunicamycin
SRR1795438 PRJNA274997 Homo sapiens HEK293 Ribo-Seq tunicamycin
SRR1795439 PRJNA274997 Homo sapiens HEK293 Ribo-Seq tunicamycin
SRR1795440 PRJNA274997 Homo sapiens HEK293 Ribo-Seq tunicamycin
Run Accession Study Accession Scientific Name Cell Line Library Type Treatment GWIPS-viz Trips-Viz Reads BAM BigWig (F) BigWig (R)

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