Su et al. 2015 (PRJNA278007)

General Details

Title IFN-g Regulates mTORC1, Cellular Metabolism and mRNA Translation to Potentiate Inflammatory Macrophage Activation [miRNA-Seq]
Organism
Number of Samples 8
Release Date 2015/03/12 00:00
Sequencing Types
Protocol Details

Study Links

Repository Details

SRA SRP056097
ENA SRP056097
GEO GSE66808
BioProject PRJNA278007

Publication

Title
Authors Su X, Yu Y, Zhong Y, Giannopoulou EG, Hu X, Liu H, Cross JR, Rätsch G, Rice CM, Ivashkiv LB
Journal Nature immunology
Publication Date 2015 Aug
Abstract Interferon-γ (IFN-γ) primes macrophages for enhanced microbial killing and inflammatory activation by Toll-like receptors (TLRs), but little is known about the regulation of cell metabolism or mRNA translation during this priming. We found that IFN-γ regulated the metabolism and mRNA translation of human macrophages by targeting the kinases mTORC1 and MNK, both of which converge on the selective regulator of translation initiation eIF4E. Physiological downregulation of mTORC1 by IFN-γ was associated with autophagy and translational suppression of repressors of inflammation such as HES1. Genome-wide ribosome profiling in TLR2-stimulated macrophages showed that IFN-γ selectively modulated the macrophage translatome to promote inflammation, further reprogram metabolic pathways and modulate protein synthesis. These results show that IFN-γ-mediated metabolic reprogramming and translational regulation are key components of classical inflammatory macrophage activation.
PMC PMC4509841
PMID 26147685
DOI
Run Accession Study Accession Scientific Name Cell Line Library Type Treatment GWIPS-viz Trips-Viz Reads BAM BigWig (F) BigWig (R)
SRR1910723 PRJNA278007 Homo sapiens 0.0 0.0 0.0
SRR1910724 PRJNA278007 Homo sapiens 0.0 0.0 0.0
SRR1910725 PRJNA278007 Homo sapiens 0.0 0.0 0.0
SRR1910726 PRJNA278007 Homo sapiens 0.0 0.0 0.0
SRR1910727 PRJNA278007 Homo sapiens 0.0 0.0 0.0
SRR1910728 PRJNA278007 Homo sapiens 0.0 0.0 0.0
SRR1910729 PRJNA278007 Homo sapiens 0.0 0.0 0.0
SRR1910730 PRJNA278007 Homo sapiens 0.0 0.0 0.0
Run Accession Study Accession Scientific Name Cell Line Library Type Treatment GWIPS-viz Trips-Viz Reads BAM BigWig (F) BigWig (R)

ⓘ For more Information on the columns shown here see: About