Lukoszek et al. 2016 (PRJNA286795)

General Details

Title Insights into the adaptive stress response of Arabidopsis thaliana to thermal stress by ribosomal profiling
Organism
Number of Samples 3
Release Date 2015/06/11 00:00
Sequencing Types
Protocol Details

Study Links

Repository Details

SRA SRP059391
ENA SRP059391
GEO GSE69802
BioProject PRJNA286795

Publication

Title
Authors Lukoszek R, Feist P, Ignatova Z
Journal BMC plant biology
Publication Date 2016 Oct 10
Abstract Environmental stress puts organisms at risk and requires specific stress-tailored responses to maximize survival. Long-term exposure to stress necessitates a global reprogramming of the cellular activities at different levels of gene expression. Here, we use ribosome profiling and RNA sequencing to globally profile the adaptive response of Arabidopsis thaliana to prolonged heat stress. To adapt to long heat exposure, the expression of many genes is modulated in a coordinated manner at a transcriptional and translational level. However, a significant group of genes opposes this trend and shows mainly translational regulation. Different secondary structure elements are likely candidates to play a role in regulating translation of those genes. Our data also uncover on how the subunit stoichiometry of multimeric protein complexes in plastids is maintained upon heat exposure.
PMC PMC5057212
PMID 27724872
DOI
Run Accession Study Accession Scientific Name Cell Line Library Type Treatment GWIPS-viz Trips-Viz Reads BAM BigWig (F) BigWig (R)
SRR2060716 PRJNA286795 Arabidopsis thaliana 0.0 Ribo-Seq 0.0
SRR2060718 PRJNA286795 Arabidopsis thaliana 0.0 Ribo-Seq 0.0
SRR2060720 PRJNA286795 Arabidopsis thaliana 0.0 Ribo-Seq 0.0
Run Accession Study Accession Scientific Name Cell Line Library Type Treatment GWIPS-viz Trips-Viz Reads BAM BigWig (F) BigWig (R)

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