Wang et al. 2018 (PRJNA292112)

General Details

Title Post-translational buffering leads to convergent protein expression levels between primates
Organism
Number of Samples 14
Release Date 2015/08/06 00:00
Sequencing Types
Protocol Details

Study Links

Repository Details

SRA SRP062129
ENA SRP062129
GEO GSE71808
BioProject PRJNA292112

Publication

Title
Authors Wang SH, Hsiao CJ, Khan Z, Pritchard JK
Journal Genome biology
Publication Date 2018 Jun 27
Abstract Differences in gene regulation between human and closely related species influence phenotypes that are distinctly human. While gene regulation is a multi-step process, the majority of research concerning divergence in gene regulation among primates has focused on transcription. To gain a comprehensive view of gene regulation, we surveyed genome-wide ribosome occupancy, which reflects levels of protein translation, in lymphoblastoid cell lines derived from human, chimpanzee, and rhesus macaque. We further integrated messenger RNA and protein level measurements collected from matching cell lines. We find that, in addition to transcriptional regulation, the major factor determining protein level divergence between human and closely related species is post-translational buffering. Inter-species divergence in transcription is generally propagated to the level of protein translation. In contrast, gene expression divergence is often attenuated post-translationally, potentially mediated through post-translational modifications. Results from our analysis indicate that post-translational buffering is a conserved mechanism that led to relaxation of selective constraint on transcript levels in humans.
PMC PMC6020354
PMID 29950183
DOI
Run Accession Study Accession Scientific Name Cell Line Library Type Treatment GWIPS-viz Trips-Viz Reads BAM BigWig (F) BigWig (R)
SRR2148106 PRJNA292112 Pan troglodytes lymphoblastoid Ribo-Seq 0.0
SRR2148107 PRJNA292112 Pan troglodytes lymphoblastoid Ribo-Seq 0.0
SRR2148108 PRJNA292112 Pan troglodytes lymphoblastoid Ribo-Seq 0.0
SRR2148109 PRJNA292112 Pan troglodytes lymphoblastoid Ribo-Seq 0.0
SRR2148110 PRJNA292112 Pan troglodytes lymphoblastoid Ribo-Seq 0.0
SRR2148111 PRJNA292112 Macaca mulatta lymphoblastoid Ribo-Seq 0.0
SRR2148112 PRJNA292112 Macaca mulatta lymphoblastoid Ribo-Seq 0.0
SRR2148113 PRJNA292112 Macaca mulatta lymphoblastoid Ribo-Seq 0.0
SRR2148114 PRJNA292112 Macaca mulatta lymphoblastoid Ribo-Seq 0.0
SRR2148115 PRJNA292112 Macaca mulatta lymphoblastoid Ribo-Seq 0.0
SRR5512735 PRJNA292112 Homo sapiens lymphoblastoid Ribo-Seq Frozen
SRR5512736 PRJNA292112 Homo sapiens lymphoblastoid Ribo-Seq Frozen
SRR5512737 PRJNA292112 Homo sapiens lymphoblastoid Ribo-Seq Frozen
SRR5512738 PRJNA292112 Homo sapiens lymphoblastoid Ribo-Seq Frozen
Run Accession Study Accession Scientific Name Cell Line Library Type Treatment GWIPS-viz Trips-Viz Reads BAM BigWig (F) BigWig (R)

ⓘ For more Information on the columns shown here see: About