Eichhorn et al. 2016 (PRJNA326506)

General Details

Title mRNA Poly(A)-tail Changes Specified by Deadenylation Broadly Reshape Translation in Drosophila Oocytes and Early Embryos
Organism
Number of Samples 14
Release Date 2016/06/22 00:00
Sequencing Types
Protocol Details

Study Links

Repository Details

SRA SRP076919
ENA SRP076919
GEO
BioProject PRJNA326506

Publication

Title
Authors Eichhorn SW,Subtelny AO,Kronja I,Kwasnieski JC,Orr-Weaver TL,Bartel DP
Journal eLife
Publication Date 2016 Jul 30
Abstract Because maturing oocytes and early embryos lack appreciable transcription, posttranscriptional regulatory processes control their development. To better understand this control, we profiled translational efficiencies and poly(A)-tail lengths throughout Drosophila oocyte maturation and early embryonic development. The correspondence between translational-efficiency changes and tail-length changes indicated that tail-length changes broadly regulate translation until gastrulation, when this coupling disappears. During egg activation, relative changes in poly(A)-tail length, and thus translational efficiency, were largely retained in the absence of cytoplasmic polyadenylation, which indicated that selective poly(A)-tail shortening primarily specifies these changes. Many translational changes depended on PAN GU and Smaug, and these changes were largely attributable to tail-length changes. Our results also revealed the presence of tail-length-independent mechanisms that maintained translation despite tail-length shortening during oocyte maturation, and prevented essentially all translation of bicoid and several other mRNAs before egg activation. In addition to these fundamental insights, our results provide valuable resources for future studies.
PMC PMC4988829
PMID 27474798
DOI
Run Accession Study Accession Scientific Name Cell Line Library Type Treatment GWIPS-viz Trips-Viz Reads BAM BigWig (F) BigWig (R)
SRR3710282 PRJNA326506 Drosophila melanogaster Ribo-Seq Cycloheximide
SRR3710283 PRJNA326506 Drosophila melanogaster Ribo-Seq Cycloheximide
SRR3710284 PRJNA326506 Drosophila melanogaster Ribo-Seq
SRR3710288 PRJNA326506 Drosophila melanogaster Ribo-Seq
SRR3710289 PRJNA326506 Drosophila melanogaster Ribo-Seq
SRR3710290 PRJNA326506 Drosophila melanogaster Ribo-Seq
SRR3710295 PRJNA326506 Drosophila melanogaster Ribo-Seq
SRR3710296 PRJNA326506 Drosophila melanogaster Ribo-Seq
SRR3710297 PRJNA326506 Drosophila melanogaster Ribo-Seq
SRR3710298 PRJNA326506 Drosophila melanogaster Ribo-Seq
SRR3710300 PRJNA326506 Drosophila melanogaster Ribo-Seq
SRR3710302 PRJNA326506 Drosophila melanogaster Ribo-Seq
SRR3710305 PRJNA326506 Drosophila melanogaster Ribo-Seq
SRR3710306 PRJNA326506 Drosophila melanogaster Ribo-Seq
Run Accession Study Accession Scientific Name Cell Line Library Type Treatment GWIPS-viz Trips-Viz Reads BAM BigWig (F) BigWig (R)

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